Os07g0649300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os07g0649300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.91 | 0.351 | 4.01 | 1.56 | 0.155 | -83.8 | 0.114 | -174 | -0.0748 | 6.58 | 15 | 90 | -- | -- |
| 56.91 | 0.354 | 3.29 | 0.0672 | 0.155 | -1.49 | 0.113 | -- | -0.0744 | 6.57 | 15 | 90 | -- | -- |
| 56.93 | 0.351 | 4.01 | 1.57 | 0.156 | -83.7 | -- | -174 | -0.0753 | 6.24 | 15.02 | 91 | -- | -- |
| 56.93 | 0.354 | 3.29 | 0.0682 | 0.156 | -1.49 | -- | -- | -0.075 | 6.22 | 15 | 90 | -- | -- |
| 58.2 | 0.355 | 4.02 | 1.57 | -- | -83.7 | -- | -174 | -0.0721 | -- | 15.04 | 91 | -- | -- |
| 61.18 | 0.367 | 3.3 | 0.00805 | 0.146 | -- | -0.271 | -- | -0.0915 | 4.35 | -- | -- | -- | -- |
| 61.23 | 0.366 | 3.3 | 0.0111 | 0.157 | -- | -- | -- | -0.0899 | 5.6 | -- | -- | -- | -- |
| 58.2 | 0.357 | 3.3 | 0.0723 | -- | -1.49 | -- | -- | -0.0716 | -- | 15 | 90 | -- | -- |
| 57.05 | 0.354 | 3.3 | -- | 0.157 | -1.46 | -- | -- | -0.0828 | 6.18 | 15 | 90 | -- | -- |
| 62.51 | 0.369 | 3.3 | 0.0161 | -- | -- | -- | -- | -0.0862 | -- | -- | -- | -- | -- |
| 61.24 | 0.366 | 3.3 | -- | 0.157 | -- | -- | -- | -0.0912 | 5.6 | -- | -- | -- | -- |
| 58.33 | 0.357 | 3.3 | -- | -- | -1.45 | -- | -- | -0.0798 | -- | 15 | 90 | -- | -- |
| 62.52 | 0.369 | 3.3 | -- | -- | -- | -- | -- | -0.088 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.07 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 3 | 55.36 | temperature | 15.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 4 | 55.57 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 5 | 55.65 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 19 | 10 |
| 12 | 55.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 12 |
| 69 | 55.97 | temperature | 20.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 79 | 55.99 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 147 | 56.06 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 11 |
| 163 | 56.10 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 179 | 56.17 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 12 |
| 191 | 56.20 | temperature | 15.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 220 | 56.26 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 222 | 56.27 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 224 | 56.28 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 225 | 56.28 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 237 | 56.31 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 240 | 56.31 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 21 | 2 |
| 245 | 56.32 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 257 | 56.36 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 266 | 56.37 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 304 | 56.44 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 18 |
| 306 | 56.44 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 322 | 56.45 | temperature | 15.0 | 720 | < th | dose independent | rect. | 21 | 4 |
| 340 | 56.46 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 347 | 56.47 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 10 |
| 350 | 56.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 11 |
| 373 | 56.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 375 | 56.50 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 403 | 56.55 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 406 | 56.56 | temperature | 15.0 | 90 | > th | dose independent | sin | 10 | NA |
| 410 | 56.56 | temperature | 15.0 | 90 | > th | dose independent | sin | 14 | NA |
| 423 | 56.57 | temperature | 15.0 | 10 | > th | dose independent | sin | 7 | NA |
| 459 | 56.57 | temperature | 15.0 | 10 | > th | dose independent | sin | 1 | NA |
| 471 | 56.57 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 473 | 56.57 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 3 |
| 483 | 56.58 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 498 | 56.59 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 5 |
| 522 | 56.60 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 10 |
| 547 | 56.62 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 557 | 56.63 | temperature | 20.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 580 | 56.64 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 646 | 56.68 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 14 | 12 |
| 699 | 56.71 | temperature | 15.0 | 270 | > th | dose independent | sin | 21 | NA |
| 712 | 56.72 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 794 | 56.79 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 795 | 56.79 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 800 | 56.79 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 880 | 56.85 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 1 |
| 886 | 56.85 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 900 | 56.87 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 940 | 56.89 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 945 | 56.90 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 952 | 56.91 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 954 | 56.91 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 986 | 56.91 | temperature | 15.0 | 1440 | < th | dose independent | sin | 22 | NA |