FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0649200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0527) R2 : 0.0843
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.872 (0.135) R2dC : 0.084 R2C : 0.0835
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.059 (0.111) R2dN8 : 0.000737 R2N8 : 0.000244
σ : 0.992
deviance : 449.74
__
_____
C
peak time of C : 19.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
431.09 0.976 3.54 -0.452 0.822 0.356 0.302 0.707 -0.00109 20 1005 65 -- --
433.7 0.97 3.54 -0.423 0.827 0.364 0.324 -- 0.0218 20 1005 45 -- --
431.36 0.967 3.54 -0.46 0.822 0.358 -- 0.71 0.000198 19.9 1005 64 -- --
434 0.97 3.54 -0.435 0.831 0.37 -- -- 0.0227 19.9 1005 44 -- --
467.92 1.01 3.52 -0.46 -- 0.407 -- 0.827 -0.000464 -- 1005 65 -- --
444.31 0.988 3.57 -0.426 0.868 -- 0.384 -- -0.108 19.8 -- -- -- --
444.73 0.988 3.56 -0.436 0.869 -- -- -- -0.108 19.7 -- -- -- --
469.85 1.01 3.5 -0.458 -- 0.44 -- -- 0.056 -- 1005 94 -- --
438.99 0.976 3.53 -- 0.846 0.364 -- -- 0.0623 19.9 1005 43 -- --
485.46 1.03 3.54 -0.447 -- -- -- -- -0.12 -- -- -- -- --
449.74 0.992 3.55 -- 0.872 -- -- -- -0.059 19.7 -- -- -- --
475.38 1.02 3.49 -- -- 0.436 -- -- 0.106 -- 1005 95 -- --
490.73 1.03 3.53 -- -- -- -- -- -0.0704 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 417.89 wind 3 10 > th dose independent rect. 21 1
2 418.38 wind 5 90 > th dose independent rect. 21 1
3 420.33 wind 3 10 > th dose dependent rect. 21 2
4 420.40 wind 3 90 > th dose dependent rect. 21 1
6 420.63 humidity 80 90 < th dose independent rect. 20 2
7 420.76 humidity 90 10 < th dose dependent rect. 21 1
8 420.79 humidity 80 90 < th dose dependent rect. 20 2
50 426.69 humidity 90 10 < th dose independent rect. 21 1
54 426.91 wind 5 270 > th dose independent rect. 17 13
61 427.17 wind 5 270 > th dose independent rect. 17 5
64 427.40 radiation 10 10 < th dose dependent rect. 12 1
69 427.47 wind 5 720 > th dose dependent rect. 21 1
70 427.54 atmosphere 1005 90 < th dose independent rect. 3 3
83 428.06 atmosphere 1005 10 < th dose independent rect. 2 5
85 428.15 wind 5 4320 > th dose dependent rect. 15 2
88 428.26 atmosphere 1005 270 < th dose independent rect. 1 4
90 428.30 atmosphere 1005 270 < th dose independent rect. 2 1
92 428.34 humidity 90 10 < th dose independent rect. 20 3
93 428.34 temperature 25 90 > th dose dependent rect. 20 5
106 428.51 temperature 20 10 < th dose dependent rect. 22 1
110 428.57 temperature 20 270 < th dose dependent rect. 6 16
115 428.64 wind 5 270 > th dose independent rect. 17 8
135 429.13 atmosphere 1005 10 < th dose independent rect. 12 19
136 429.16 wind 7 90 > th dose dependent rect. 13 1
137 429.17 wind 7 10 > th dose dependent rect. 13 1
138 429.17 wind 5 270 > th dose dependent rect. 17 13
147 429.23 radiation 10 10 < th dose independent rect. 11 4
169 429.42 wind 5 270 > th dose dependent rect. 18 4
171 429.45 atmosphere 1005 90 < th dose independent rect. 12 18
181 429.55 wind 9 10 > th dose independent rect. 13 1
208 429.61 wind 5 4320 < th dose independent rect. 14 15
214 429.63 wind 5 4320 > th dose independent rect. 14 15
225 429.74 atmosphere 1005 30 < th dose independent rect. 17 14
230 429.79 wind 5 30 > th dose independent rect. 21 12
243 429.92 wind 5 4320 > th dose independent rect. 15 1
254 430.04 atmosphere 1005 10 < th dose dependent rect. 10 1
262 430.14 temperature 25 90 > th dose dependent rect. 20 7
282 430.24 atmosphere 1005 90 > th dose independent rect. 10 20
283 430.25 wind 3 30 > th dose dependent rect. 21 12
288 430.28 temperature 25 720 > th dose independent rect. 24 8
302 430.33 wind 1 90 < th dose dependent rect. 10 1
313 430.38 atmosphere 1005 30 > th dose independent rect. 15 22
322 430.41 atmosphere 1005 90 < th dose independent rect. 24 23
323 430.42 wind 5 270 > th dose independent sin 13 NA
336 430.46 temperature 20 10 < th dose dependent rect. 6 17
340 430.48 atmosphere 1000 720 > th dose independent rect. 9 13
370 430.64 atmosphere 1000 1440 > th dose independent rect. 21 3
381 430.72 atmosphere 1000 1440 > th dose independent rect. 23 1
393 430.79 atmosphere 1000 720 > th dose independent rect. 5 17
399 430.81 wind 3 30 > th dose dependent rect. 21 8
404 430.82 atmosphere 1000 720 < th dose dependent rect. 3 14
408 430.83 atmosphere 1005 1440 < th dose dependent rect. 1 1
414 430.85 atmosphere 1000 1440 > th dose independent rect. 1 1
423 430.88 atmosphere 1000 720 < th dose dependent sin 1 NA
425 430.89 atmosphere 1000 1440 > th dose independent rect. 21 5
432 430.91 atmosphere 1005 1440 < th dose dependent rect. 24 3
435 430.92 temperature 25 90 < th dose independent rect. 3 4
439 430.94 atmosphere 1000 1440 < th dose independent rect. 21 5
448 430.96 wind 5 4320 < th dose independent rect. 15 2
462 430.98 temperature 25 90 < th dose dependent rect. 17 5
470 431.01 temperature 25 270 > th dose dependent rect. 2 3
530 431.17 atmosphere 1000 720 > th dose independent rect. 2 20
531 431.17 atmosphere 1000 720 > th dose independent rect. 24 23
566 431.25 temperature 25 270 > th dose independent rect. 2 2
569 431.25 atmosphere 1000 720 < th dose dependent rect. 13 1
583 431.28 atmosphere 1005 30 > th dose independent rect. 22 23
585 431.29 temperature 20 10 < th dose independent rect. 20 2
590 431.30 atmosphere 1005 90 < th dose independent rect. 19 11
597 431.30 atmosphere 1000 720 < th dose dependent rect. 7 8
621 431.34 atmosphere 995 1440 > th dose independent rect. 16 8
652 431.39 atmosphere 1005 90 < th dose independent rect. 8 22
672 431.42 atmosphere 1000 720 < th dose dependent rect. 9 6
678 431.44 temperature 20 270 < th dose independent rect. 6 16
721 431.52 atmosphere 1010 270 < th dose dependent rect. 10 20
730 431.55 atmosphere 1000 1440 > th dose independent rect. 21 11
742 431.56 atmosphere 1005 270 < th dose dependent rect. 12 19
749 431.58 atmosphere 1000 720 > th dose independent rect. 9 22
765 431.62 temperature 20 10 < th dose independent rect. 22 1
769 431.62 atmosphere 1005 30 > th dose independent rect. 15 16
776 431.63 atmosphere 1000 1440 < th dose independent rect. 21 11
795 431.66 wind 5 4320 > th dose independent rect. 14 7
815 431.70 atmosphere 1000 1440 > th dose independent rect. 6 1
881 431.79 temperature 25 270 > th dose independent rect. 1 5
882 431.79 wind 1 720 > th dose independent rect. 10 7
903 431.82 wind 3 270 > th dose independent rect. 2 1
909 431.83 wind 5 4320 < th dose independent rect. 14 7
931 431.86 atmosphere 1005 90 < th dose independent rect. 15 23
977 431.93 wind 3 270 > th dose dependent sin 13 NA
993 431.94 temperature 20 10 < th dose dependent rect. 13 10