Os07g0648700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0648700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.73 | 0.545 | 9.41 | 0.996 | 1.03 | 1.72 | 0.455 | 0.842 | -0.372 | 8.38 | 22.1 | 1936 | -- | -- |
| 136.08 | 0.543 | 9.38 | 1.24 | 1.09 | 1.7 | 0.596 | -- | -0.32 | 8.43 | 22.09 | 1719 | -- | -- |
| 135.23 | 0.542 | 9.41 | 0.978 | 1.05 | 1.72 | -- | 0.919 | -0.385 | 8.48 | 22.05 | 1840 | -- | -- |
| 136.46 | 0.544 | 9.38 | 1.22 | 1.12 | 1.71 | -- | -- | -0.324 | 8.26 | 22.01 | 1478 | -- | -- |
| 190.55 | 0.643 | 9.43 | 1.06 | -- | 1.83 | -- | 0.791 | -0.324 | -- | 22.1 | 2135 | -- | -- |
| 237.63 | 0.723 | 9.51 | 0.561 | 1.1 | -- | 0.518 | -- | -0.876 | 8.44 | -- | -- | -- | -- |
| 238.46 | 0.723 | 9.51 | 0.577 | 1.1 | -- | -- | -- | -0.875 | 8.49 | -- | -- | -- | -- |
| 192.24 | 0.646 | 9.4 | 1.35 | -- | 1.83 | -- | -- | -0.245 | -- | 22.07 | 2148 | -- | -- |
| 168.85 | 0.605 | 9.43 | -- | 1.1 | 1.36 | -- | -- | -0.522 | 8.13 | 22.4 | 1354 | -- | -- |
| 306.49 | 0.818 | 9.53 | 0.582 | -- | -- | -- | -- | -0.865 | -- | -- | -- | -- | -- |
| 247.25 | 0.736 | 9.52 | -- | 1.1 | -- | -- | -- | -0.94 | 8.45 | -- | -- | -- | -- |
| 211.11 | 0.677 | 9.43 | -- | -- | 1.45 | -- | -- | -0.411 | -- | 24.6 | 611 | -- | -- |
| 315.43 | 0.829 | 9.55 | -- | -- | -- | -- | -- | -0.929 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 136.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 3 | 136.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 13 | 137.29 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 18 | 137.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 46 | 137.78 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 406 | 141.52 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 422 | 141.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 425 | 141.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 495 | 142.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 580 | 142.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 585 | 142.71 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 627 | 142.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 835 | 144.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 864 | 144.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 938 | 145.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |