Os07g0648300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0648300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.48 | 0.218 | 11.4 | 1.69 | 0.185 | -0.165 | -0.407 | 2.61 | 0.295 | 6.54 | 27.1 | 1321 | -- | -- |
| 22.19 | 0.219 | 11.4 | 1.06 | 0.208 | 0.165 | -0.392 | -- | 0.191 | 6.56 | 30.08 | 6211 | -- | -- |
| 21.84 | 0.218 | 11.4 | 1.68 | 0.184 | -0.166 | -- | 2.64 | 0.294 | 7.12 | 27.19 | 1305 | -- | -- |
| 22.54 | 0.221 | 11.4 | 1.06 | 0.208 | 0.165 | -- | -- | 0.19 | 6.8 | 30.09 | 6245 | -- | -- |
| 23.64 | 0.226 | 11.4 | 1.7 | -- | -0.166 | -- | 2.68 | 0.299 | -- | 27.11 | 1306 | -- | -- |
| 23.35 | 0.227 | 11.4 | 1.1 | 0.199 | -- | -0.385 | -- | 0.179 | 6.51 | -- | -- | -- | -- |
| 23.71 | 0.228 | 11.4 | 1.1 | 0.197 | -- | -- | -- | 0.181 | 6.79 | -- | -- | -- | -- |
| 24.61 | 0.231 | 11.4 | 1.06 | -- | 0.152 | -- | -- | 0.196 | -- | 30.1 | 5812 | -- | -- |
| 30.69 | 0.258 | 11.5 | -- | 0.195 | 0.805 | -- | -- | -0.181 | 6.9 | 12.14 | 47520 | -- | -- |
| 25.74 | 0.237 | 11.4 | 1.1 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 55.54 | 0.349 | 11.5 | -- | 0.211 | -- | -- | -- | 0.0583 | 6.48 | -- | -- | -- | -- |
| 32.56 | 0.266 | 11.5 | -- | -- | 0.78 | -- | -- | -0.189 | -- | 15.6 | 47520 | -- | -- |
| 57.86 | 0.355 | 11.5 | -- | -- | -- | -- | -- | 0.0621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.59 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 3 | 20.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 4 | 20.80 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 12 | 20.96 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 14 | 21.04 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 15 | 21.04 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 18 | 21.05 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 19 | 21.05 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 21 | 21.06 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 22 | 21.06 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 30 | 21.07 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 31 | 21.07 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 35 | 21.07 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 36 | 21.07 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 58 | 21.08 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 59 | 21.08 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 60 | 21.08 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 155 | 21.12 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 157 | 21.13 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 169 | 21.13 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 170 | 21.14 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 173 | 21.14 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 194 | 21.15 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 225 | 21.16 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 246 | 21.17 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 261 | 21.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 284 | 21.19 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 330 | 21.20 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 15 | 15 |
| 356 | 21.21 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 358 | 21.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 361 | 21.21 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 15 | 13 |
| 366 | 21.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 391 | 21.22 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 407 | 21.23 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 414 | 21.23 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 432 | 21.23 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 468 | 21.24 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 469 | 21.24 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 482 | 21.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 521 | 21.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 522 | 21.25 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 570 | 21.26 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 577 | 21.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 579 | 21.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 582 | 21.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 587 | 21.26 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 594 | 21.27 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 621 | 21.27 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 623 | 21.27 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 2 |
| 626 | 21.27 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 639 | 21.27 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 647 | 21.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 676 | 21.28 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 691 | 21.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 769 | 21.29 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 774 | 21.29 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 778 | 21.30 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 804 | 21.30 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 820 | 21.30 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 889 | 21.31 | atmosphere | 1000.0 | 43200 | > th | dose independent | no | NA | NA |
| 892 | 21.31 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 937 | 21.31 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 990 | 21.31 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 19 | 17 |