Os07g0648100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0648100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.23 | 0.47 | 7.07 | -2.61 | 1.47 | -0.807 | 0.292 | 0.275 | -0.019 | 6.27 | 23 | 1953 | -- | -- |
| 100.16 | 0.466 | 7.06 | -2.51 | 1.47 | -0.812 | 0.32 | -- | 0.00195 | 6.3 | 22.92 | 2070 | -- | -- |
| 100.37 | 0.467 | 7.07 | -2.56 | 1.48 | -0.81 | -- | 0.167 | -0.00387 | 6.29 | 23 | 1981 | -- | -- |
| 100.39 | 0.467 | 7.06 | -2.51 | 1.47 | -0.815 | -- | -- | 0.011 | 6.33 | 22.9 | 2057 | -- | -- |
| 202.48 | 0.663 | 7.1 | -2.76 | -- | -1.01 | -- | 0.816 | -0.038 | -- | 24 | 2771 | -- | -- |
| 127.17 | 0.529 | 6.99 | -2.19 | 1.45 | -- | 0.342 | -- | 0.341 | 6.16 | -- | -- | -- | -- |
| 127.45 | 0.529 | 6.99 | -2.19 | 1.45 | -- | -- | -- | 0.34 | 6.18 | -- | -- | -- | -- |
| 202.51 | 0.663 | 7.1 | -2.59 | -- | -0.993 | -- | -- | 0.00852 | -- | 24 | 2768 | -- | -- |
| 248.6 | 0.734 | 6.96 | -- | 1.46 | -0.309 | -- | -- | 0.487 | 6.4 | 22.4 | 742 | -- | -- |
| 236.8 | 0.719 | 7.01 | -2.14 | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
| 253.29 | 0.744 | 6.93 | -- | 1.42 | -- | -- | -- | 0.583 | 6.26 | -- | -- | -- | -- |
| 352.97 | 0.875 | 6.98 | -- | -- | -0.332 | -- | -- | 0.498 | -- | 22.6 | 1371 | -- | -- |
| 358.13 | 0.883 | 6.96 | -- | -- | -- | -- | -- | 0.61 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 28 | 99.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 9 |
| 42 | 99.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 53 | 99.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 115 | 99.87 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 135 | 99.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 268 | 100.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 296 | 100.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 349 | 100.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 521 | 100.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 747 | 101.33 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 748 | 101.33 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 794 | 101.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 795 | 101.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 805 | 101.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 823 | 101.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 862 | 101.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 884 | 101.54 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 893 | 101.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 975 | 101.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 9 |