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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0648000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0155) R2 : 0.018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0946 (0.0327) R2dN8 : 0.0233 R2N8 : 0.018
σ : 0.292
deviance : 39.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.89 0.289 2.96 -0.00254 0.0823 -0.0881 -0.176 0.579 0.109 10.6 20.01 109 -- --
38.56 0.289 2.96 -0.00391 0.0851 -0.0999 0.165 -- 0.0964 10.5 22.3 159 -- --
37.98 0.287 2.95 -0.0125 0.0908 -0.0971 -- 0.497 0.107 10.5 20.03 108 -- --
38.64 0.29 2.96 -0.00195 0.0859 -0.105 -- -- 0.0955 10.9 22.3 159 -- --
38.27 0.288 2.96 -0.0161 -- -0.0391 -- 0.476 0.103 -- 20 108 -- --
38.97 0.293 2.96 -0.0215 0.0503 -- 0.124 -- 0.0923 9.39 -- -- -- --
38.99 0.292 2.96 -0.0179 0.0565 -- -- -- 0.0919 7.84 -- -- -- --
38.78 0.29 2.97 -0.0106 -- -0.14 -- -- 0.104 -- 46.01 359 -- --
38.64 0.29 2.96 -- 0.0871 -0.109 -- -- 0.0961 11 22.29 159 -- --
39.17 0.292 2.97 -0.0173 -- -- -- -- 0.0926 -- -- -- -- --
39 0.292 2.96 -- 0.0563 -- -- -- 0.0939 7.87 -- -- -- --
38.78 0.29 2.96 -- -- -0.138 -- -- 0.103 -- 45.76 357 -- --
39.18 0.292 2.97 -- -- -- -- -- 0.0946 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.72 radiation 10.0 10 > th dose independent rect. 6 1
27 32.72 radiation 10.0 10 > th dose dependent rect. 6 1
55 34.55 temperature 10.0 1440 > th dose independent rect. 21 1
58 34.55 temperature 30.0 1440 < th dose independent rect. 21 1
62 34.55 humidity 50.0 1440 > th dose independent rect. 21 1
68 34.55 atmosphere 995.0 1440 > th dose independent rect. 21 1
69 34.55 radiation 1.0 1440 < th dose independent rect. 21 1
89 34.55 temperature 10.0 1440 > th dose independent rect. 22 23
92 34.56 radiation 30.0 1440 < th dose dependent rect. 21 1
94 34.57 temperature 25.0 30 > th dose independent rect. 20 1
96 34.60 wind 3.0 30 > th dose independent rect. 20 1
97 34.60 temperature 20.0 30 > th dose dependent rect. 20 1
99 34.61 humidity 80.0 30 > th dose independent rect. 20 1
100 34.61 atmosphere 1005.0 30 > th dose dependent rect. 20 1
106 34.64 humidity 90.0 30 < th dose independent rect. 20 1
109 34.65 wind 5.0 30 < th dose independent rect. 20 1
113 34.66 temperature 10.0 30 > th dose independent rect. 20 1
116 34.66 temperature 30.0 30 < th dose independent rect. 20 1
117 34.66 humidity 50.0 30 > th dose independent rect. 20 1
120 34.66 atmosphere 995.0 30 > th dose independent rect. 20 1
123 34.66 atmosphere 1010.0 30 < th dose independent rect. 20 1
125 34.66 radiation 1.0 30 < th dose independent rect. 20 1
130 34.66 precipitation 0.1 30 < th dose independent rect. 20 1
131 34.66 temperature 10.0 30 > th dose independent rect. 21 23
132 34.66 wind 1.0 30 > th dose dependent rect. 20 1
133 34.66 radiation 1.0 30 < th dose dependent rect. 20 1
140 34.66 precipitation 0.1 30 < th dose dependent rect. 20 1
141 34.67 humidity 50.0 30 > th dose dependent rect. 20 1
144 34.69 wind 9.0 30 < th dose dependent rect. 20 1
151 34.79 atmosphere 1015.0 30 < th dose dependent rect. 20 1
152 34.82 humidity 90.0 30 < th dose dependent rect. 20 1
156 34.87 wind 9.0 1440 < th dose independent rect. 21 1
157 34.91 wind 9.0 30 < th dose independent rect. 21 23
159 34.94 temperature 30.0 30 < th dose dependent rect. 20 1
204 35.27 wind 3.0 30 < th dose dependent rect. 6 1
208 35.35 atmosphere 1005.0 30 > th dose dependent rect. 6 1
218 35.77 humidity 80.0 30 > th dose dependent rect. 6 1
225 36.00 temperature 30.0 30 < th dose dependent rect. 6 1
231 36.32 temperature 25.0 10 > th dose independent rect. 4 3
235 36.41 atmosphere 995.0 30 > th dose independent rect. 21 23
238 36.42 wind 3.0 30 < th dose independent rect. 6 1
240 36.42 temperature 25.0 10 > th dose independent rect. 20 12
253 36.62 radiation 10.0 10 < th dose dependent rect. 6 1
255 36.70 wind 9.0 1440 < th dose independent rect. 7 1
256 36.70 temperature 25.0 10 > th dose independent rect. 6 1
257 36.70 temperature 10.0 1440 > th dose independent rect. 7 1
261 36.70 temperature 30.0 1440 < th dose independent rect. 7 1
265 36.70 humidity 50.0 1440 > th dose independent rect. 7 1
270 36.70 atmosphere 995.0 1440 > th dose independent rect. 7 1
271 36.70 atmosphere 1015.0 1440 < th dose independent rect. 7 1
273 36.70 temperature 10.0 1440 > th dose independent rect. 8 23
279 36.72 wind 1.0 30 > th dose independent rect. 6 1
280 36.72 humidity 80.0 30 > th dose independent rect. 6 1
282 36.72 humidity 90.0 30 < th dose independent rect. 6 1
288 36.74 temperature 10.0 30 > th dose independent rect. 6 1
290 36.74 temperature 30.0 30 < th dose independent rect. 6 1
291 36.74 humidity 50.0 30 > th dose independent rect. 6 1
294 36.74 atmosphere 995.0 30 > th dose independent rect. 6 1
297 36.74 atmosphere 1015.0 30 < th dose independent rect. 6 1
298 36.74 radiation 20.0 30 < th dose independent rect. 6 1
301 36.74 precipitation 0.1 30 < th dose independent rect. 6 1
302 36.74 temperature 10.0 30 > th dose independent rect. 7 23
304 36.74 precipitation 0.1 30 < th dose dependent rect. 6 1
308 36.81 temperature 20.0 90 < th dose independent rect. 10 1
309 36.81 temperature 20.0 10 < th dose independent rect. 11 1
315 36.81 humidity 90.0 90 > th dose independent rect. 10 1
318 36.81 precipitation 0.1 90 > th dose independent rect. 10 1
337 36.81 precipitation 0.1 30 < th dose independent rect. 21 23
338 36.81 temperature 20.0 90 < th dose dependent rect. 10 1
339 36.81 temperature 20.0 10 < th dose dependent rect. 11 1
345 36.81 humidity 90.0 90 > th dose dependent rect. 10 1
348 36.81 precipitation 0.1 90 > th dose dependent rect. 10 1
365 36.81 atmosphere 1005.0 90 > th dose dependent rect. 3 4
369 36.81 precipitation 0.1 30 < th dose dependent rect. 21 23
382 36.86 atmosphere 1005.0 270 > th dose dependent rect. 3 1
392 36.93 temperature 25.0 720 > th dose dependent rect. 23 10
409 36.95 wind 9.0 30 < th dose independent rect. 7 23
411 36.95 temperature 10.0 30 > th dose dependent rect. 6 1
416 36.96 atmosphere 1010.0 30 < th dose independent rect. 21 23
446 37.05 temperature 10.0 10 > th dose dependent rect. 8 12
468 37.09 temperature 20.0 10 > th dose dependent rect. 8 12
502 37.18 wind 9.0 10 > th dose independent rect. 18 1
506 37.18 wind 9.0 10 > th dose dependent rect. 18 1
515 37.20 radiation 1.0 30 > th dose dependent rect. 18 1
518 37.20 temperature 15.0 90 > th dose dependent rect. 3 4
545 37.23 temperature 10.0 720 > th dose dependent rect. 8 1
589 37.25 wind 9.0 90 > th dose dependent rect. 18 5
613 37.31 wind 3.0 270 > th dose independent rect. 3 1
614 37.31 temperature 25.0 10 > th dose independent rect. 22 10
620 37.31 temperature 25.0 30 > th dose dependent rect. 20 3
630 37.33 temperature 25.0 720 > th dose dependent rect. 5 4
634 37.34 temperature 25.0 30 > th dose independent rect. 8 12
641 37.36 humidity 50.0 30 > th dose independent rect. 21 23
642 37.36 precipitation 0.1 30 < th dose independent rect. 7 23
646 37.36 temperature 20.0 30 > th dose dependent rect. 8 9
648 37.36 precipitation 0.1 30 < th dose dependent rect. 7 23
651 37.37 temperature 10.0 90 > th dose dependent rect. 7 10
659 37.39 temperature 15.0 270 > th dose dependent rect. 3 1
661 37.40 humidity 80.0 30 < th dose independent rect. 8 9
666 37.41 humidity 80.0 90 > th dose independent rect. 3 20
671 37.42 temperature 25.0 720 > th dose independent rect. 8 1
675 37.42 temperature 10.0 30 > th dose dependent rect. 8 19
676 37.42 temperature 10.0 30 > th dose dependent rect. 21 23
681 37.43 temperature 25.0 90 > th dose independent rect. 23 20
700 37.45 humidity 80.0 30 > th dose independent rect. 3 11
702 37.45 humidity 70.0 30 > th dose independent rect. 10 22
819 37.49 temperature 20.0 30 > th dose independent rect. 8 9
822 37.49 atmosphere 995.0 30 > th dose independent rect. 7 23
839 37.50 temperature 20.0 30 > th dose dependent rect. 8 19
850 37.52 atmosphere 1005.0 270 > th dose independent rect. 3 1
867 37.53 humidity 60.0 270 > th dose independent rect. 13 13
876 37.54 humidity 90.0 90 < th dose independent rect. 3 4
877 37.54 humidity 80.0 30 > th dose independent rect. 3 18
880 37.54 wind 1.0 270 > th dose dependent rect. 3 1
887 37.55 atmosphere 1005.0 90 > th dose independent rect. 3 4
902 37.56 temperature 25.0 720 > th dose independent rect. 5 4
913 37.57 atmosphere 1010.0 30 < th dose independent rect. 8 12
944 37.58 radiation 1.0 10 > th dose independent rect. 8 22
961 37.59 humidity 80.0 30 > th dose independent rect. 6 15
984 37.60 temperature 20.0 30 > th dose dependent rect. 23 21