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Os07g0647900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DEAD/DEAH box helicase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0232) R2 : 0.623
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.623 (0.0567) R2dC : 0.106 R2C : 0.196
β3 : -1.34 (0.0612) R2dE : 0.431 R2E : 0.515
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0852 (0.0489) R2dN8 : 0.00207 R2N8 : -0.00494
σ : 0.435
deviance : 87.08
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_____
C
peak time of C : 12.9
E
wheather : wind
threshold : 4.4
memory length : 222
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.6
open length of G : 5.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.56 0.432 10.1 -0.123 0.594 -1.46 -0.778 -0.316 0.0403 12.3 4.832 261 1.2 5.07
84.67 0.429 10.1 -0.101 0.591 -1.45 -0.776 -- 0.0476 12.2 4.825 251 1.27 5.13
87.02 0.434 10.1 -0.142 0.601 -1.44 -- -0.163 0.0492 12.4 4.9 252 1.28 5.1
87.01 0.434 10.1 -0.136 0.601 -1.42 -- -- 0.0722 12.5 4.696 241 1.4 5.06
105.45 0.478 10.1 -0.153 -- -1.43 -- -0.161 0.0441 -- 4.4 208 1.15 5.37
125.04 0.524 10.1 -0.21 1.38 -- -0.0291 -- -0.0326 16 -- -- -- --
125.05 0.524 10.1 -0.211 1.38 -- -- -- -0.0328 16 -- -- -- --
105.51 0.478 10.1 -0.145 -- -1.43 -- -- 0.0425 -- 4.417 207 1.16 5.38
87.08 0.435 10.1 -- 0.623 -1.34 -- -- 0.0852 12.9 4.4 222 1.6 5.02
229.28 0.708 10.1 -0.267 -- -- -- -- -0.0696 -- -- -- -- --
126.21 0.526 10.1 -- 1.39 -- -- -- -0.00931 16 -- -- -- --
106.04 0.48 10.1 -- -- -1.43 -- -- 0.0602 -- 4.432 207 1.17 5.4
231.16 0.71 10.1 -- -- -- -- -- -0.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.23 wind 5.0 270 < th dose independent rect. 1 5
2 85.93 wind 5.0 270 < th dose independent rect. 3 2
3 86.12 precipitation 0.1 270 < th dose independent rect. 3 2
4 86.12 precipitation 0.1 270 < th dose dependent rect. 3 2
6 86.74 precipitation 0.1 270 < th dose independent rect. 13 17
7 86.74 precipitation 0.1 270 < th dose dependent rect. 13 17
9 87.14 precipitation 0.1 270 < th dose independent rect. 1 5
10 87.14 precipitation 0.1 270 < th dose dependent rect. 1 5
15 87.66 wind 9.0 270 < th dose independent rect. 5 22
16 87.69 precipitation 0.1 270 < th dose independent rect. 2 15
17 87.69 precipitation 0.1 270 < th dose dependent rect. 2 15
20 88.07 wind 9.0 270 < th dose independent rect. 6 19
21 88.18 temperature 15.0 270 > th dose independent rect. 6 7
28 88.57 wind 9.0 270 < th dose dependent rect. 3 2
30 88.58 temperature 10.0 270 > th dose independent rect. 3 2
32 88.58 temperature 30.0 270 < th dose independent rect. 3 2
33 88.58 humidity 50.0 270 > th dose independent rect. 3 2
36 88.58 atmosphere 995.0 270 > th dose independent rect. 3 2
37 88.58 atmosphere 1010.0 270 < th dose independent rect. 3 2
39 88.58 radiation 20.0 270 < th dose independent rect. 3 2
42 88.58 temperature 10.0 270 > th dose independent rect. 5 22
44 88.60 wind 7.0 270 < th dose independent rect. 6 7
45 88.61 radiation 40.0 270 < th dose dependent rect. 3 2
51 88.65 radiation 1.0 270 < th dose dependent rect. 3 2
55 88.72 radiation 1.0 270 < th dose independent rect. 3 2
58 88.75 temperature 10.0 270 > th dose independent rect. 1 5
60 88.75 temperature 30.0 270 < th dose independent rect. 1 5
61 88.75 humidity 50.0 270 > th dose independent rect. 1 5
64 88.75 atmosphere 995.0 270 > th dose independent rect. 1 5
65 88.75 atmosphere 1015.0 270 < th dose independent rect. 1 5
66 88.75 radiation 20.0 270 < th dose independent rect. 1 5
69 88.75 temperature 10.0 270 > th dose independent rect. 6 19
71 88.80 wind 9.0 90 < th dose independent rect. 8 19
73 88.95 wind 9.0 90 < th dose dependent rect. 3 5
74 89.00 humidity 50.0 270 > th dose independent rect. 6 7
75 89.05 radiation 40.0 270 < th dose dependent rect. 1 5
82 89.29 precipitation 0.1 270 < th dose independent rect. 6 7
83 89.29 precipitation 0.1 270 < th dose dependent rect. 6 7
85 89.34 wind 1.0 270 > th dose independent rect. 1 5
103 89.41 atmosphere 995.0 270 > th dose independent rect. 6 7
104 89.41 atmosphere 1015.0 270 < th dose independent rect. 6 7
105 89.41 temperature 10.0 270 > th dose independent rect. 13 17
119 89.59 temperature 10.0 90 > th dose independent rect. 8 19
124 89.65 wind 9.0 270 < th dose dependent rect. 1 5
129 89.74 radiation 10.0 270 < th dose independent rect. 17 9
132 89.92 wind 9.0 270 < th dose independent rect. 13 17
135 90.01 radiation 30.0 270 < th dose dependent rect. 17 9
142 90.19 wind 9.0 270 < th dose independent rect. 17 9
143 90.19 temperature 30.0 270 < th dose dependent rect. 3 2
159 90.27 humidity 50.0 270 > th dose independent rect. 17 9
160 90.29 wind 1.0 270 > th dose independent rect. 12 18
162 90.33 temperature 10.0 270 > th dose independent rect. 17 9
166 90.33 temperature 10.0 270 > th dose independent rect. 2 15
167 90.33 atmosphere 1015.0 270 < th dose independent rect. 2 15
172 90.46 wind 9.0 270 < th dose dependent rect. 6 7
186 90.47 radiation 1.0 270 > th dose independent rect. 6 7
208 90.75 precipitation 0.1 10 < th dose independent rect. 3 6
209 90.75 precipitation 0.1 10 < th dose dependent rect. 3 6
218 90.88 humidity 50.0 270 > th dose dependent rect. 17 8
224 91.03 wind 5.0 10 < th dose independent rect. 3 6
238 91.21 humidity 50.0 270 > th dose dependent rect. 3 2
241 91.26 atmosphere 995.0 270 > th dose independent rect. 17 9
253 91.41 humidity 50.0 270 > th dose independent rect. 6 19
254 91.41 wind 9.0 10 < th dose dependent rect. 3 6
258 91.48 atmosphere 995.0 90 > th dose independent rect. 8 19
259 91.49 precipitation 0.1 270 < th dose independent rect. 6 19
260 91.49 precipitation 0.1 270 < th dose dependent rect. 6 19
261 91.52 precipitation 0.1 270 < th dose independent rect. 11 20
262 91.52 precipitation 0.1 270 < th dose dependent rect. 11 20
269 91.64 wind 9.0 270 < th dose independent rect. 2 15
283 91.73 temperature 10.0 270 > th dose dependent rect. 6 6
284 91.74 atmosphere 995.0 270 > th dose independent rect. 6 19
288 91.83 precipitation 0.1 270 < th dose independent rect. 10 23
289 91.83 precipitation 0.1 270 < th dose dependent rect. 10 23
293 91.86 radiation 40.0 90 < th dose dependent rect. 3 6
303 91.98 temperature 30.0 270 < th dose dependent rect. 1 5
305 91.99 atmosphere 995.0 270 > th dose independent rect. 13 17
309 92.00 atmosphere 1015.0 270 < th dose independent rect. 6 19
326 92.20 radiation 1.0 270 < th dose dependent rect. 2 9
358 92.46 wind 9.0 10 < th dose independent rect. 9 18
365 92.52 wind 1.0 270 > th dose independent rect. 3 1
370 92.55 radiation 1.0 270 < th dose independent rect. 2 9
405 92.63 radiation 40.0 270 < th dose independent rect. 13 17
416 92.69 temperature 15.0 270 > th dose independent rect. 7 4
425 92.72 precipitation 0.1 90 < th dose independent rect. 8 19
427 92.72 precipitation 0.1 90 < th dose dependent rect. 8 19
428 92.73 wind 9.0 270 < th dose dependent rect. 7 4
436 92.76 atmosphere 1015.0 90 < th dose independent rect. 8 19
445 92.79 humidity 50.0 270 > th dose dependent rect. 2 4
462 92.86 atmosphere 995.0 270 > th dose independent rect. 2 15
468 92.92 temperature 30.0 90 < th dose dependent rect. 3 5
501 93.05 wind 7.0 270 < th dose independent rect. 7 4
519 93.14 atmosphere 1015.0 270 < th dose dependent rect. 3 2
523 93.15 temperature 10.0 10 > th dose independent rect. 3 6
525 93.15 temperature 30.0 10 < th dose independent rect. 3 6
526 93.15 humidity 50.0 10 > th dose independent rect. 3 6
528 93.15 atmosphere 995.0 10 > th dose independent rect. 3 6
529 93.15 atmosphere 1015.0 10 < th dose independent rect. 3 6
531 93.15 temperature 10.0 10 > th dose independent rect. 9 18
541 93.20 temperature 15.0 90 > th dose independent rect. 8 6
554 93.33 radiation 1.0 270 > th dose independent rect. 7 4
562 93.35 wind 9.0 270 < th dose dependent rect. 6 19
572 93.41 precipitation 0.1 270 < th dose independent rect. 17 9
575 93.41 precipitation 0.1 270 < th dose dependent rect. 17 9
672 93.62 precipitation 0.1 10 < th dose independent rect. 9 18
673 93.62 precipitation 0.1 10 < th dose dependent rect. 9 18
677 93.66 radiation 40.0 10 < th dose independent rect. 3 6
702 93.81 temperature 30.0 270 < th dose independent rect. 17 9
707 93.83 humidity 50.0 270 > th dose independent rect. 7 4
719 93.89 precipitation 0.1 90 < th dose independent rect. 8 6
720 93.89 precipitation 0.1 90 < th dose dependent rect. 8 6
736 93.96 temperature 10.0 270 > th dose dependent rect. 3 2
738 93.97 wind 9.0 90 < th dose dependent rect. 8 19
769 94.09 atmosphere 995.0 90 > th dose independent rect. 8 6
770 94.09 atmosphere 1015.0 90 < th dose independent rect. 8 6
778 94.11 radiation 1.0 270 < th dose dependent rect. 5 21
780 94.12 precipitation 0.1 10 < th dose independent rect. 14 19
783 94.12 precipitation 0.1 10 < th dose dependent rect. 14 19
816 94.26 temperature 10.0 270 > th dose dependent rect. 7 4
834 94.28 humidity 50.0 90 > th dose independent rect. 8 6
902 94.46 radiation 1.0 270 > th dose independent rect. 8 2
997 94.67 atmosphere 995.0 10 > th dose independent rect. 9 18