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Os07g0647300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.6 (0.345) R2 : 0.481
β1 : 6.01 (1.05) R2dD : 3.13 R2D : -8.19
β2 : 1.53 (0.084) R2dC : 0.39 R2C : -4.58
β3 : 75.6 (13.7) R2dE : 199 R2E : -196
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 225 (41.7) R2dD*E : 188 R2D*E : -191
γ1 : 0.0877 (0.0686) R2dN8 : 0.00261 R2N8 : -5.25
σ : 0.596
deviance : 163.57
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C
peak time of C : 18.5
E
wheather : radiation
threshold : 1.303
memory length : 1347
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.06

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.97 0.598 7.66 6.19 1.54 75.2 0.448 224 0.0868 18.5 1 1442 11 1
199.94 0.664 5.76 0.106 1.47 -0.747 0.906 -- 0.00337 18.5 1 1442 11 1
163.57 0.596 7.6 6.01 1.53 75.6 -- 225 0.0877 18.5 1.303 1347 11 1.06
184.34 0.632 5.66 0.215 1.44 1.02 -- -- 0.128 18.8 0.1098 1351 10.6 2.86
285.26 0.787 7.56 5.94 -- 75.7 -- 225 0.0573 -- 1.445 1333 11 1.04
200.49 0.664 5.76 0.116 1.47 -- 0.899 -- 0.00656 18.5 -- -- -- --
202.52 0.666 5.76 0.103 1.47 -- -- -- 0.0092 18.6 -- -- -- --
283.49 0.784 5.69 0.292 -- 1.58 -- -- 0.104 -- 3.122 1364 10.7 2.1
180.57 0.626 5.72 -- 1.44 1.23 -- -- 0.128 18.5 2.34 1544 11.2 2.58
315.25 0.83 5.73 0.0671 -- -- -- -- -0.0209 -- -- -- -- --
202.79 0.666 5.76 -- 1.47 -- -- -- -0.00227 18.6 -- -- -- --
287.07 0.789 5.7 -- -- 1.47 -- -- 0.0916 -- 3.09 1347 10.7 2.1
315.37 0.829 5.73 -- -- -- -- -- -0.0284 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.97 radiation 1.0 1440 < th dose independent rect. 11 1
2 164.97 radiation 1.0 1440 < th dose dependent rect. 11 1
3 169.68 radiation 1.0 1440 < th dose independent rect. 9 5
4 169.68 radiation 1.0 1440 < th dose dependent rect. 9 5
5 169.76 radiation 1.0 1440 < th dose independent rect. 13 1
6 169.76 radiation 1.0 1440 < th dose dependent rect. 13 1
40 171.47 radiation 1.0 1440 > th dose independent rect. 13 1
44 171.76 humidity 60.0 14400 > th dose independent rect. 5 3
49 171.86 radiation 1.0 1440 > th dose independent rect. 8 6
77 173.72 precipitation 0.1 270 > th dose dependent rect. 2 2
79 173.77 precipitation 0.1 270 > th dose independent rect. 2 2
80 173.81 humidity 70.0 14400 < th dose dependent rect. 21 1
100 175.10 humidity 60.0 14400 < th dose independent rect. 6 1
102 175.10 humidity 60.0 14400 < th dose independent rect. 20 1
104 175.10 radiation 20.0 14400 > th dose independent rect. 17 1
155 175.10 humidity 60.0 14400 < th dose dependent rect. 6 1
159 175.10 radiation 20.0 14400 > th dose dependent rect. 17 1
223 175.86 humidity 90.0 90 < th dose independent rect. 2 6
225 176.06 humidity 90.0 90 < th dose dependent rect. 6 1
229 176.25 humidity 60.0 14400 > th dose independent rect. 3 5
244 176.92 atmosphere 1005.0 90 < th dose dependent rect. 24 9
247 177.06 wind 1.0 270 < th dose independent rect. 3 2
249 177.09 atmosphere 1005.0 10 < th dose dependent rect. 1 7
270 177.76 humidity 90.0 720 > th dose dependent rect. 20 5
282 178.14 humidity 90.0 10 < th dose dependent rect. 6 2
339 179.63 humidity 60.0 14400 > th dose independent rect. 1 7
340 179.63 humidity 60.0 14400 > th dose independent rect. 20 12
344 179.74 radiation 20.0 1440 < th dose dependent rect. 11 16
348 179.78 radiation 20.0 1440 < th dose dependent rect. 11 14
367 179.97 radiation 1.0 1440 > th dose independent rect. 8 2
371 180.03 humidity 90.0 90 < th dose independent rect. 5 3
392 180.38 humidity 90.0 720 > th dose dependent rect. 20 1
411 180.75 atmosphere 1005.0 90 > th dose dependent rect. 2 6
413 180.77 humidity 80.0 1440 > th dose independent rect. 12 2
464 181.16 atmosphere 1005.0 720 < th dose independent rect. 20 5
476 181.34 radiation 10.0 1440 < th dose independent rect. 12 15
481 181.37 wind 7.0 4320 > th dose independent rect. 17 2
482 181.37 humidity 90.0 10 < th dose independent rect. 5 3
487 181.38 radiation 10.0 1440 < th dose independent rect. 12 13
505 181.53 atmosphere 1005.0 90 > th dose dependent rect. 24 8
563 181.83 atmosphere 1005.0 270 < th dose dependent rect. 1 1
573 181.92 wind 7.0 4320 < th dose independent rect. 17 2
575 181.93 temperature 10.0 43200 > th dose independent rect. 9 7
578 181.99 humidity 80.0 1440 < th dose independent rect. 12 2
596 182.20 atmosphere 1005.0 720 < th dose independent rect. 20 1
608 182.25 humidity 90.0 90 > th dose dependent rect. 24 7
618 182.40 humidity 60.0 14400 > th dose independent rect. 20 2
624 182.45 wind 7.0 4320 > th dose dependent rect. 17 2
627 182.48 wind 3.0 14400 < th dose dependent rect. 1 1
657 182.64 atmosphere 1005.0 720 < th dose independent rect. 23 1
674 182.76 radiation 1.0 90 > th dose independent rect. 18 14
683 182.83 radiation 1.0 10 > th dose dependent rect. 18 14
685 182.84 temperature 15.0 90 > th dose dependent rect. 8 7
693 182.87 radiation 10.0 1440 < th dose dependent sin 20 NA
694 182.87 radiation 1.0 10 > th dose dependent rect. 5 3
718 182.94 humidity 90.0 14400 > th dose independent rect. 6 1
720 182.95 humidity 90.0 14400 > th dose dependent rect. 6 1
723 183.00 humidity 70.0 1440 > th dose dependent rect. 12 1
727 183.02 radiation 20.0 4320 > th dose dependent rect. 6 2
774 183.19 wind 7.0 4320 > th dose independent rect. 15 4
781 183.20 radiation 30.0 4320 < th dose independent rect. 22 10
799 183.23 humidity 90.0 720 > th dose independent rect. 20 5
805 183.29 radiation 30.0 4320 < th dose independent rect. 2 6
817 183.33 radiation 1.0 90 > th dose independent rect. 5 3
848 183.37 wind 1.0 14400 > th dose independent rect. 24 2
854 183.39 humidity 90.0 10 < th dose dependent rect. 24 8
857 183.42 humidity 90.0 270 > th dose dependent rect. 20 11
859 183.43 radiation 30.0 4320 < th dose independent rect. 4 4
860 183.43 radiation 30.0 4320 < th dose independent rect. 17 15
869 183.51 radiation 30.0 4320 < th dose independent rect. 6 2
885 183.62 radiation 10.0 1440 > th dose independent rect. 11 19
895 183.63 wind 5.0 270 < th dose independent rect. 15 16
930 183.81 atmosphere 1005.0 10 > th dose dependent rect. 7 1
969 183.92 radiation 1.0 1440 > th dose dependent rect. 11 2
981 183.99 humidity 90.0 14400 < th dose independent rect. 6 2
998 184.07 temperature 20.0 270 > th dose independent rect. 22 15