FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0646800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Avr9/Cf-9 rapidly elicited protein 231.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0169) R2 : 0.00952
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0745 (0.0356) R2dN8 : 0.0123 R2N8 : 0.00952
σ : 0.318
deviance : 46.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.48 0.306 3.28 0.169 0.112 0.254 0.0883 1.19 -0.0981 8.26 88.79 5892 -- --
44.47 0.311 3.27 0.0997 0.155 0.306 0.122 -- -0.127 7.9 91 5081 -- --
42.5 0.304 3.28 0.173 0.113 0.255 -- 1.19 -0.0984 8.02 89 5901 -- --
44.47 0.311 3.28 0.0999 0.151 0.313 -- -- -0.132 8.03 91 5082 -- --
43.19 0.306 3.28 0.174 -- 0.261 -- 1.17 -0.1 -- 89 5875 -- --
45.64 0.317 3.26 0.0805 0.111 -- 0.0772 -- -0.0665 8.14 -- -- -- --
45.65 0.316 3.26 0.0824 0.112 -- -- -- -0.0667 7.91 -- -- -- --
45.18 0.313 3.28 0.104 -- 0.286 -- -- -0.119 -- 88 5810 -- --
44.7 0.311 3.28 -- 0.149 0.305 -- -- -0.135 7.99 88 5093 -- --
46.33 0.318 3.27 0.0836 -- -- -- -- -0.0652 -- -- -- -- --
45.83 0.317 3.26 -- 0.112 -- -- -- -0.0759 7.86 -- -- -- --
45.37 0.314 3.28 -- -- 0.277 -- -- -0.119 -- 88 4355 -- --
46.51 0.318 3.27 -- -- -- -- -- -0.0745 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.03 humidity 80.0 14400 < th dose dependent rect. 4 5
4 41.10 radiation 20.0 43200 < th dose dependent rect. 23 1
11 41.40 humidity 70.0 14400 > th dose independent rect. 8 1
14 41.57 humidity 70.0 14400 > th dose independent rect. 4 5
15 41.57 humidity 70.0 14400 > th dose independent rect. 24 9
16 41.57 humidity 70.0 14400 > th dose independent rect. 21 12
26 41.62 humidity 70.0 14400 < th dose independent rect. 8 1
27 41.62 wind 1.0 14400 < th dose dependent rect. 6 1
28 41.67 atmosphere 1000.0 30 > th dose independent rect. 23 23
38 41.88 humidity 70.0 14400 < th dose independent rect. 21 12
39 41.89 humidity 70.0 14400 < th dose independent rect. 6 3
52 41.93 atmosphere 1000.0 720 > th dose independent rect. 3 8
53 41.96 precipitation 0.1 1440 < th dose independent rect. 23 1
54 41.96 precipitation 0.1 1440 < th dose dependent rect. 23 1
55 41.97 wind 9.0 1440 < th dose independent rect. 23 1
56 41.97 temperature 25.0 30 > th dose independent rect. 22 1
57 41.97 temperature 10.0 1440 > th dose independent rect. 23 1
60 41.97 temperature 30.0 1440 < th dose independent rect. 23 1
64 41.97 humidity 50.0 1440 > th dose independent rect. 23 1
74 41.97 atmosphere 995.0 1440 > th dose independent rect. 23 1
75 41.97 radiation 1.0 1440 < th dose independent rect. 23 1
95 41.97 temperature 10.0 1440 > th dose independent rect. 24 23
103 41.98 temperature 25.0 30 > th dose independent rect. 20 3
110 42.02 humidity 80.0 30 > th dose independent rect. 22 1
112 42.04 wind 3.0 30 < th dose independent rect. 22 1
113 42.04 temperature 20.0 30 > th dose dependent rect. 22 1
114 42.04 atmosphere 1005.0 30 > th dose dependent rect. 22 1
118 42.07 precipitation 0.1 720 < th dose independent rect. 15 8
121 42.07 precipitation 0.1 720 < th dose dependent rect. 15 8
122 42.08 atmosphere 1005.0 30 > th dose independent rect. 22 1
123 42.08 atmosphere 995.0 720 > th dose independent rect. 23 16
126 42.09 humidity 90.0 30 < th dose independent rect. 22 1
142 42.11 humidity 70.0 30 > th dose dependent rect. 22 1
143 42.12 wind 1.0 30 > th dose independent rect. 22 1
145 42.12 precipitation 0.1 30 < th dose independent rect. 22 1
147 42.12 wind 5.0 30 < th dose dependent rect. 22 1
150 42.12 humidity 50.0 30 > th dose dependent rect. 22 1
152 42.12 precipitation 0.1 30 < th dose dependent rect. 22 1
155 42.13 temperature 10.0 30 > th dose independent rect. 22 1
157 42.13 temperature 30.0 30 < th dose independent rect. 22 1
158 42.13 humidity 50.0 30 > th dose independent rect. 22 1
162 42.13 atmosphere 1010.0 30 < th dose independent rect. 22 1
164 42.13 radiation 1.0 30 < th dose independent rect. 22 1
176 42.13 temperature 10.0 30 > th dose independent rect. 23 23
177 42.13 radiation 1.0 30 < th dose dependent rect. 22 1
187 42.15 wind 1.0 14400 < th dose independent rect. 6 1
191 42.17 wind 5.0 14400 < th dose independent rect. 11 1
200 42.25 atmosphere 1015.0 30 < th dose dependent rect. 22 1
204 42.27 wind 1.0 30 > th dose dependent rect. 22 1
206 42.28 temperature 25.0 90 > th dose dependent rect. 20 3
208 42.29 humidity 90.0 30 < th dose dependent rect. 22 1
214 42.33 precipitation 0.1 720 < th dose independent rect. 11 16
215 42.33 precipitation 0.1 720 < th dose dependent rect. 11 16
218 42.35 temperature 30.0 30 < th dose dependent rect. 22 1
222 42.37 wind 1.0 14400 < th dose dependent rect. 4 4
224 42.38 humidity 50.0 720 > th dose independent rect. 3 8
225 42.38 humidity 60.0 14400 < th dose dependent rect. 12 1
236 42.47 humidity 70.0 4320 > th dose independent rect. 10 1
237 42.48 wind 1.0 14400 < th dose independent rect. 4 4
239 42.49 temperature 10.0 720 > th dose independent rect. 3 8
240 42.49 temperature 10.0 720 > th dose independent rect. 15 8
242 42.49 temperature 10.0 720 > th dose independent rect. 11 16
243 42.49 temperature 10.0 720 > th dose independent rect. 23 16
244 42.50 wind 1.0 14400 > th dose independent rect. 5 2
246 42.50 wind 1.0 14400 > th dose independent rect. 4 4
248 42.50 humidity 70.0 4320 > th dose dependent rect. 3 8
249 42.51 humidity 50.0 4320 > th dose dependent rect. 11 1
251 42.51 humidity 50.0 4320 > th dose dependent rect. 2 11
252 42.51 humidity 90.0 4320 < th dose dependent rect. 23 14
257 42.53 humidity 70.0 4320 < th dose independent rect. 10 1
258 42.53 wind 5.0 14400 < th dose independent rect. 10 5
264 42.55 wind 5.0 14400 > th dose independent rect. 11 1
269 42.55 atmosphere 995.0 720 > th dose independent rect. 15 8
279 42.55 humidity 50.0 4320 > th dose dependent rect. 23 14
290 42.57 humidity 80.0 4320 < th dose dependent rect. 11 1
324 42.58 wind 9.0 30 < th dose independent rect. 23 23
325 42.58 precipitation 0.1 30 < th dose independent rect. 23 23
331 42.58 humidity 90.0 4320 < th dose dependent rect. 3 10
338 42.58 precipitation 0.1 30 < th dose dependent rect. 23 23
367 42.59 humidity 90.0 4320 < th dose dependent sin 5 NA
383 42.60 humidity 70.0 4320 > th dose independent sin 6 NA
385 42.60 wind 5.0 14400 > th dose independent rect. 10 5
387 42.60 humidity 50.0 14400 > th dose dependent rect. 8 1
403 42.61 wind 9.0 720 < th dose independent rect. 3 8
430 42.63 humidity 50.0 4320 > th dose dependent sin 5 NA
519 42.67 wind 1.0 14400 < th dose dependent rect. 4 7
573 42.69 humidity 70.0 4320 < th dose independent sin 5 NA
766 42.75 humidity 60.0 4320 < th dose dependent rect. 14 1
770 42.75 humidity 70.0 4320 > th dose dependent rect. 7 5
784 42.76 humidity 50.0 4320 > th dose independent rect. 14 1
806 42.76 humidity 80.0 4320 > th dose dependent rect. 7 2
881 42.79 wind 1.0 14400 < th dose independent rect. 4 7
981 42.81 humidity 60.0 14400 < th dose dependent rect. 19 19
987 42.82 wind 1.0 14400 > th dose independent rect. 4 7