Os07g0646400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0646400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.4 | 0.459 | 3.18 | -0.278 | 0.1 | 1.52 | -0.264 | -8.09 | 0.0423 | 3.72 | 998.5 | 1841 | -- | -- |
| 95.61 | 0.455 | 3.12 | 0.0516 | 0.108 | 1.64 | -0.245 | -- | 0.0432 | 4.01 | 994.5 | 2309 | -- | -- |
| 95.52 | 0.455 | 3.17 | -0.223 | 0.0989 | 1.48 | -- | -8.1 | 0.0424 | 4.34 | 998.2 | 1841 | -- | -- |
| 95.77 | 0.456 | 3.12 | 0.0524 | 0.107 | 1.62 | -- | -- | 0.0439 | 4.43 | 994.6 | 2092 | -- | -- |
| 96.08 | 0.457 | 3.17 | -0.219 | -- | 1.48 | -- | -8.1 | 0.0455 | -- | 998.2 | 1844 | -- | -- |
| 103.46 | 0.477 | 3.13 | -0.00297 | 0.0983 | -- | -0.106 | -- | 0.024 | 5.48 | -- | -- | -- | -- |
| 103.48 | 0.476 | 3.13 | -0.00317 | 0.0979 | -- | -- | -- | 0.0245 | 5.71 | -- | -- | -- | -- |
| 96.39 | 0.457 | 3.12 | 0.0561 | -- | 1.6 | -- | -- | 0.0474 | -- | 994.6 | 2026 | -- | -- |
| 95.85 | 0.456 | 3.12 | -- | 0.108 | 1.61 | -- | -- | 0.0392 | 4.42 | 994.5 | 2047 | -- | -- |
| 103.98 | 0.476 | 3.13 | -7.79e-05 | -- | -- | -- | -- | 0.0269 | -- | -- | -- | -- | -- |
| 103.48 | 0.476 | 3.13 | -- | 0.0979 | -- | -- | -- | 0.0249 | 5.71 | -- | -- | -- | -- |
| 96.47 | 0.457 | 3.12 | -- | -- | 1.59 | -- | -- | 0.0417 | -- | 994.6 | 1997 | -- | -- |
| 103.98 | 0.476 | 3.13 | -- | -- | -- | -- | -- | 0.0269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.82 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 2 | 93.93 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 94.02 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 6 | 94.08 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 7 | 94.11 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 9 | 94.13 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 12 | 94.14 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 13 | 94.14 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 16 | 94.18 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 19 | 94.20 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 20 | 94.20 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 22 | 94.20 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 23 | 94.20 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 26 | 94.20 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 27 | 94.20 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 29 | 94.20 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 34 | 94.20 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 35 | 94.20 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 37 | 94.20 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 42 | 94.20 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 47 | 94.32 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 23 | 5 |
| 50 | 94.49 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 55 | 94.76 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 62 | 95.12 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 66 | 95.20 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 23 | 10 |
| 75 | 95.37 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 80 | 95.45 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 86 | 95.52 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 96 | 95.56 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 98 | 95.57 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 99 | 95.57 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 105 | 95.61 | wind | 9.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 106 | 95.61 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 111 | 95.61 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 112 | 95.61 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 259 | 95.61 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 260 | 95.61 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 265 | 95.61 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 487 | 95.78 | atmosphere | 1000.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 495 | 95.78 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 505 | 95.79 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 578 | 95.85 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 720 | 95.99 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 721 | 95.99 | atmosphere | 1000.0 | 1440 | < th | dose dependent | no | NA | NA |
| 722 | 95.99 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 737 | 96.04 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 750 | 96.08 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 785 | 96.21 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 23 |
| 786 | 96.21 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 801 | 96.25 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 823 | 96.28 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 833 | 96.31 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 840 | 96.32 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 921 | 96.63 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 936 | 96.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 939 | 96.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 961 | 96.81 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 980 | 96.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 997 | 96.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 1 |