Os07g0645800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os07g0645800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.35 | 0.279 | 10.9 | -0.207 | 0.606 | -0.759 | -0.173 | 1.14 | -0.309 | 6.75 | 26.5 | 797 | -- | -- |
| 35.96 | 0.279 | 10.9 | -0.0208 | 0.516 | -1.06 | 0.0408 | -- | -0.236 | 6.36 | 22.42 | 1236 | -- | -- |
| 35.41 | 0.277 | 10.9 | -0.201 | 0.596 | -0.763 | -- | 1.09 | -0.307 | 6.8 | 26.49 | 832 | -- | -- |
| 35.93 | 0.279 | 10.9 | -0.0437 | 0.512 | -1.05 | -- | -- | -0.229 | 6.37 | 22.42 | 1228 | -- | -- |
| 49.37 | 0.327 | 10.9 | -0.171 | -- | -0.832 | -- | 0.883 | -0.288 | -- | 25.1 | 1274 | -- | -- |
| 47.09 | 0.322 | 10.8 | 0.244 | 0.532 | -- | -0.153 | -- | -0.0765 | 5.92 | -- | -- | -- | -- |
| 47.14 | 0.322 | 10.8 | 0.243 | 0.531 | -- | -- | -- | -0.0758 | 5.99 | -- | -- | -- | -- |
| 49.35 | 0.327 | 10.9 | -0.0521 | -- | -1.13 | -- | -- | -0.228 | -- | 22.38 | 1331 | -- | -- |
| 35.97 | 0.279 | 10.9 | -- | 0.512 | -1.02 | -- | -- | -0.222 | 6.37 | 22.5 | 1222 | -- | -- |
| 61.78 | 0.367 | 10.9 | 0.259 | -- | -- | -- | -- | -0.0637 | -- | -- | -- | -- | -- |
| 48.7 | 0.326 | 10.9 | -- | 0.535 | -- | -- | -- | -0.103 | 5.97 | -- | -- | -- | -- |
| 49.41 | 0.327 | 10.9 | -- | -- | -1.09 | -- | -- | -0.219 | -- | 22.43 | 1324 | -- | -- |
| 63.55 | 0.372 | 10.9 | -- | -- | -- | -- | -- | -0.0924 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 21 | 35.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 31 | 35.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 32 | 35.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 33 | 35.48 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 20 |
| 36 | 35.50 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 16 | 16 |
| 46 | 35.53 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 48 | 35.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 55 | 35.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 56 | 35.56 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 18 |
| 73 | 35.64 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 18 |
| 75 | 35.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 76 | 35.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 93 | 35.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 114 | 35.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 239 | 36.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 244 | 36.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 259 | 36.25 | temperature | 20 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 286 | 36.28 | temperature | 25 | 1440 | < th | dose dependent | sin | 2 | NA |
| 300 | 36.29 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 310 | 36.30 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 369 | 36.33 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 2 | 21 |
| 417 | 36.35 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 504 | 36.39 | temperature | 20 | 1440 | < th | dose dependent | sin | 11 | NA |
| 523 | 36.40 | temperature | 20 | 1440 | < th | dose dependent | sin | 7 | NA |
| 757 | 36.56 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 777 | 36.58 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 5 | 19 |
| 789 | 36.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 881 | 36.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 927 | 36.69 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 3 | 18 |
| 954 | 36.72 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 4 |