Os07g0645500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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Os07g0645500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.67 | 0.707 | 2.98 | 0.472 | 0.0848 | 19.7 | -0.312 | 40.7 | -0.0241 | 23.4 | 1015 | 1516 | -- | -- |
| 258.4 | 0.749 | 2.78 | 0.285 | 0.0263 | 0.599 | -0.642 | -- | 0.062 | 23.2 | 1014 | 4431 | -- | -- |
| 226.9 | 0.702 | 2.97 | 0.474 | 0.0946 | 19.6 | -- | 40.7 | -0.0267 | 22.4 | 1015 | 1516 | -- | -- |
| 250.78 | 0.738 | 2.82 | 0.387 | 0.0851 | 1.27 | -- | -- | 0.0479 | 2.04 | 1012 | 2387 | -- | -- |
| 227.3 | 0.702 | 2.98 | 0.459 | -- | 20.3 | -- | 42.2 | -0.0258 | -- | 1015 | 1515 | -- | -- |
| 265.08 | 0.763 | 2.84 | 0.236 | 0.0549 | -- | -0.511 | -- | -0.0445 | 23.2 | -- | -- | -- | -- |
| 266.2 | 0.764 | 2.84 | 0.257 | 0.0581 | -- | -- | -- | -0.0424 | 22.8 | -- | -- | -- | -- |
| 251.22 | 0.738 | 2.82 | 0.381 | -- | 1.26 | -- | -- | 0.0452 | -- | 1012 | 2367 | -- | -- |
| 254.28 | 0.743 | 2.83 | -- | 0.0881 | 1.2 | -- | -- | -0.00562 | 0.868 | 1012 | 2506 | -- | -- |
| 266.4 | 0.763 | 2.84 | 0.258 | -- | -- | -- | -- | -0.0421 | -- | -- | -- | -- | -- |
| 267.93 | 0.766 | 2.84 | -- | 0.0602 | -- | -- | -- | -0.071 | 23.1 | -- | -- | -- | -- |
| 254.72 | 0.743 | 2.83 | -- | -- | 1.2 | -- | -- | -0.00931 | -- | 1013 | 2525 | -- | -- |
| 268.16 | 0.764 | 2.84 | -- | -- | -- | -- | -- | -0.0707 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.70 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 2 |
| 2 | 223.45 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 4 | 224.63 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 6 | 225.15 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 7 | 225.44 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 24 | 9 |
| 8 | 225.52 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 12 | 225.90 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 14 | 225.96 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 16 | 226.03 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 17 | 226.06 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 18 | 226.07 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 23 | 226.14 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 14 |
| 26 | 226.25 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 40 | 226.38 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 55 | 226.38 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 76 | 226.52 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 95 | 226.83 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 122 | 227.31 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 132 | 227.62 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 142 | 227.81 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 198 | 229.14 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 268 | 230.10 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 366 | 231.40 | atmosphere | 1015.0 | 1440 | > th | dose dependent | no | NA | NA |
| 367 | 231.40 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 460 | 232.35 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 488 | 232.35 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 521 | 232.63 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 573 | 233.66 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 576 | 233.77 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 590 | 233.84 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 607 | 234.44 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 722 | 235.42 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 724 | 235.44 | wind | 5.0 | 90 | > th | dose dependent | rect. | 22 | 3 |
| 775 | 236.02 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 785 | 236.06 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 788 | 236.07 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 791 | 236.08 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 812 | 236.16 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 814 | 236.16 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 861 | 236.31 | wind | 7.0 | 90 | > th | dose independent | rect. | 22 | 3 |
| 914 | 237.42 | atmosphere | 1015.0 | 1440 | > th | dose independent | no | NA | NA |
| 920 | 237.42 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 18 |