Os07g0645200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os07g0645200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.06 | 0.517 | 5.4 | 1.85 | 0.816 | 1.04 | -1.07 | -3.03 | 0.736 | 15.8 | 25.7 | 360 | -- | -- |
| 132.98 | 0.537 | 5.43 | 1.44 | 0.691 | 1.3 | -0.859 | -- | 0.658 | 14.9 | 24.31 | 376 | -- | -- |
| 123.62 | 0.518 | 5.41 | 1.83 | 0.789 | 1.09 | -- | -2.75 | 0.735 | 16 | 25.76 | 431 | -- | -- |
| 128.31 | 0.528 | 5.49 | 1.4 | 0.689 | 2.01 | -- | -- | 0.519 | 16 | 20.43 | 480 | -- | -- |
| 141.45 | 0.554 | 5.39 | 2.09 | -- | 1.4 | -- | -3.53 | 0.74 | -- | 33.47 | 1166 | -- | -- |
| 154.99 | 0.584 | 5.52 | 1 | 0.663 | -- | -0.457 | -- | 0.355 | 15.3 | -- | -- | -- | -- |
| 155.64 | 0.584 | 5.52 | 0.992 | 0.663 | -- | -- | -- | 0.352 | 15.4 | -- | -- | -- | -- |
| 150.04 | 0.57 | 5.48 | 1.39 | -- | 2 | -- | -- | 0.506 | -- | 19.9 | 816 | -- | -- |
| 172.77 | 0.612 | 5.54 | -- | 0.619 | 1.37 | -- | -- | 0.276 | 15.5 | 18 | 485 | -- | -- |
| 180.35 | 0.628 | 5.52 | 0.964 | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
| 181.6 | 0.63 | 5.55 | -- | 0.643 | -- | -- | -- | 0.242 | 15.4 | -- | -- | -- | -- |
| 193.56 | 0.648 | 5.53 | -- | -- | 1.21 | -- | -- | 0.287 | -- | 19.29 | 765 | -- | -- |
| 204.89 | 0.668 | 5.55 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 5 | 112.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 14 | 113.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 19 | 113.99 | radiation | 20 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 23 | 114.52 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 24 | 114.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 29 | 114.72 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 30 | 114.73 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 13 |
| 41 | 115.01 | humidity | 80 | 14400 | > th | dose dependent | sin | 9 | NA |
| 81 | 115.70 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 19 |
| 129 | 116.69 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 136 | 116.75 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 142 | 116.80 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 152 | 116.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 158 | 116.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 162 | 116.94 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 261 | 117.44 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 311 | 117.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 321 | 117.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 334 | 117.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 336 | 117.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 340 | 117.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 352 | 117.79 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 415 | 117.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 455 | 118.12 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 482 | 118.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 523 | 118.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 669 | 118.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 699 | 118.91 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 706 | 118.93 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 719 | 118.96 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 740 | 119.05 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 766 | 119.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 820 | 119.35 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 841 | 119.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 988 | 119.88 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |