Os07g0643500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0643500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.88 | 0.697 | 5.73 | 1.32 | 0.061 | 0.503 | -1.79 | -11.3 | 0.468 | 13.9 | 29.43 | 1253 | -- | -- |
| 228.2 | 0.704 | 5.48 | 3.36 | 0.0619 | -0.816 | -1.7 | -- | 0.558 | 13.9 | 28.9 | 2656 | -- | -- |
| 231.98 | 0.709 | 5.72 | 1.38 | 0.0913 | 0.493 | -- | -10.8 | 0.504 | 16.5 | 29.63 | 1259 | -- | -- |
| 237.03 | 0.717 | 5.49 | 3.29 | 0.1 | -0.731 | -- | -- | 0.542 | 15.4 | 30.88 | 1213 | -- | -- |
| 232.39 | 0.71 | 5.71 | 1.44 | -- | 0.427 | -- | -10.4 | 0.477 | -- | 29.54 | 1258 | -- | -- |
| 254.69 | 0.748 | 5.46 | 3.14 | 0.183 | -- | -1.52 | -- | 0.669 | 14.1 | -- | -- | -- | -- |
| 263.17 | 0.76 | 5.47 | 3.09 | 0.197 | -- | -- | -- | 0.661 | 15.4 | -- | -- | -- | -- |
| 237.53 | 0.718 | 5.49 | 3.27 | -- | -0.746 | -- | -- | 0.531 | -- | 30.9 | 1218 | -- | -- |
| 508.97 | 1.05 | 5.56 | -- | 0.0677 | -0.406 | -- | -- | 0.268 | 14.2 | 34.65 | 1235 | -- | -- |
| 265.35 | 0.761 | 5.47 | 3.08 | -- | -- | -- | -- | 0.656 | -- | -- | -- | -- | -- |
| 515.15 | 1.06 | 5.54 | -- | 0.136 | -- | -- | -- | 0.317 | 15.5 | -- | -- | -- | -- |
| 508.97 | 1.05 | 5.56 | -- | -- | -0.6 | -- | -- | 0.248 | -- | 34.88 | 1234 | -- | -- |
| 516.18 | 1.06 | 5.54 | -- | -- | -- | -- | -- | 0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.44 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 7 | 221.68 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 35 | 221.69 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 67 | 221.70 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 74 | 221.72 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 84 | 221.76 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 311 | 222.74 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 315 | 222.88 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 329 | 222.88 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 330 | 222.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 331 | 222.89 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 332 | 222.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 348 | 222.94 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 354 | 223.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 356 | 223.16 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 363 | 223.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 364 | 223.27 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 481 | 223.33 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 483 | 223.33 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 485 | 223.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 488 | 223.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 497 | 223.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 499 | 223.37 | temperature | 30.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 501 | 223.37 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 504 | 223.39 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 506 | 223.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 508 | 223.41 | temperature | 30.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 514 | 223.42 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 517 | 223.44 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 518 | 223.45 | temperature | 30.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 524 | 223.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 11 |
| 592 | 223.65 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 593 | 223.66 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 596 | 223.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 601 | 223.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 604 | 223.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 611 | 223.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 616 | 223.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 626 | 223.67 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 670 | 223.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 672 | 223.68 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 689 | 223.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 756 | 223.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 781 | 223.85 | temperature | 30.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 785 | 223.86 | temperature | 30.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 814 | 223.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 848 | 223.98 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 869 | 224.00 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 918 | 224.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 922 | 224.11 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 925 | 224.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 926 | 224.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 929 | 224.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 933 | 224.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 956 | 224.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 966 | 224.18 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 972 | 224.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 985 | 224.24 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 986 | 224.24 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 987 | 224.24 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 991 | 224.25 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 15 |