Os07g0642300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transport protein particle (TRAPP) component, Bet3 family protein.
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Os07g0642300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transport protein particle (TRAPP) component, Bet3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.86 | 0.252 | 13.5 | 0.113 | 0.715 | -0.203 | 0.421 | 2.53 | 0.248 | 1.63 | 30.4 | 729 | -- | -- |
| 29.2 | 0.252 | 13.5 | 0.346 | 0.714 | -0.857 | 0.15 | -- | 0.304 | 1.66 | 18.08 | 6254 | -- | -- |
| 29.06 | 0.251 | 13.5 | 0.113 | 0.74 | -0.266 | -- | 2.91 | 0.253 | 1.68 | 47.23 | 478 | -- | -- |
| 28.98 | 0.251 | 13.5 | 0.297 | 0.728 | -1 | -- | -- | 0.31 | 1.46 | 18.16 | 6201 | -- | -- |
| 56.42 | 0.352 | 13.4 | 0.501 | -- | 0.697 | -- | 2.19 | 0.443 | -- | 47.23 | 478 | -- | -- |
| 35.56 | 0.28 | 13.4 | 0.644 | 0.732 | -- | 0.112 | -- | 0.413 | 1.47 | -- | -- | -- | -- |
| 35.61 | 0.279 | 13.4 | 0.64 | 0.732 | -- | -- | -- | 0.412 | 1.45 | -- | -- | -- | -- |
| 60.54 | 0.364 | 13.4 | 0.804 | -- | 0.74 | -- | -- | 0.527 | -- | 47.23 | 478 | -- | -- |
| 30.32 | 0.256 | 13.5 | -- | 0.729 | -1.21 | -- | -- | 0.245 | 1.46 | 18.95 | 6233 | -- | -- |
| 68.51 | 0.387 | 13.4 | 0.669 | -- | -- | -- | -- | 0.428 | -- | -- | -- | -- | -- |
| 46.42 | 0.319 | 13.5 | -- | 0.743 | -- | -- | -- | 0.341 | 1.48 | -- | -- | -- | -- |
| 61.82 | 0.366 | 13.5 | -- | -- | -1.2 | -- | -- | 0.246 | -- | 14.9 | 31131 | -- | -- |
| 80.33 | 0.418 | 13.4 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.09 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 2 | 27.12 | temperature | 20.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 9 | 27.25 | temperature | 30.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 10 | 27.30 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 16 | 27.35 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 17 | 27.36 | temperature | 15.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 18 | 27.36 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 22 | 27.37 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 45 | 27.47 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 46 | 27.47 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 48 | 27.48 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 87 | 27.61 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 88 | 27.61 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 91 | 27.63 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 99 | 27.65 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 109 | 27.68 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 113 | 27.69 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 13 |
| 143 | 27.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 153 | 27.77 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 159 | 27.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 187 | 27.83 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 188 | 27.84 | temperature | 15.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 206 | 27.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 14 |
| 298 | 27.99 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 319 | 28.01 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 336 | 28.02 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 369 | 28.05 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 414 | 28.09 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 429 | 28.11 | temperature | 20.0 | 720 | > th | dose independent | sin | 18 | NA |
| 488 | 28.17 | temperature | 20.0 | 720 | < th | dose independent | rect. | 11 | 15 |
| 505 | 28.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 513 | 28.18 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 532 | 28.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 539 | 28.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 549 | 28.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 15 |
| 569 | 28.22 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 625 | 28.25 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 638 | 28.26 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 684 | 28.29 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 782 | 28.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 787 | 28.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 796 | 28.35 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 846 | 28.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 849 | 28.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 956 | 28.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 958 | 28.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |