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Os07g0641600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM (and some other nucleotide) binding motif domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.51 (0.0219) R2 : 0.461
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.21 (0.0618) R2dE : 0.448 R2E : 0.445
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.046) R2dN8 : 0.0156 R2N8 : 0.0123
σ : 0.411
deviance : 77.72
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C
peak time of C : --
E
wheather : temperature
threshold : -33.64
memory length : 1250
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.93
open length of G : 5.91

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.84 0.381 8.54 -0.374 1.2 1.44 0.365 0.594 0.143 21.3 9.915 123 7.97 6.7
66.27 0.379 8.54 -0.382 1.2 1.44 0.0504 -- 0.137 21.3 9.936 123 7.97 6.62
66.13 0.379 8.53 -0.368 1.2 1.45 -- 0.315 0.149 21.3 9.784 126 7.95 6.72
66.27 0.379 8.54 -0.383 1.2 1.45 -- -- 0.144 21.3 9.975 125 7.96 6.65
93.82 0.451 8.5 -0.382 -- 1.06 -- 0.515 0.134 -- 6.137 865 8.07 6.9
97.3 0.462 8.52 -0.303 0.896 -- 0.298 -- 0.133 17.6 -- -- -- --
97.52 0.462 8.52 -0.305 0.898 -- -- -- 0.135 17.6 -- -- -- --
73.5 0.399 8.52 -0.419 -- 1.29 -- -- 0.0699 -- -26.65 1281 4.87 5.75
70.14 0.39 8.53 -- 1.18 1.38 -- -- 0.175 21.2 9.303 117 8.07 6.58
139.37 0.552 8.51 -0.334 -- -- -- -- 0.113 -- -- -- -- --
99.96 0.468 8.52 -- 0.903 -- -- -- 0.168 17.6 -- -- -- --
77.72 0.411 8.51 -- -- 1.21 -- -- 0.136 -- -33.64 1250 4.93 5.91
142.3 0.557 8.5 -- -- -- -- -- 0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.00 temperature 10.0 90 > th dose dependent rect. 8 7
3 68.16 temperature 15.0 10 > th dose dependent rect. 9 6
22 70.18 temperature 15.0 270 > th dose dependent rect. 8 3
28 70.44 wind 9.0 270 < th dose dependent rect. 7 7
30 70.59 temperature 15.0 270 > th dose dependent rect. 9 1
35 70.85 temperature 15.0 90 > th dose independent rect. 8 7
38 71.00 temperature 10.0 10 > th dose dependent rect. 9 17
39 71.00 temperature 10.0 10 > th dose dependent rect. 9 19
40 71.03 humidity 90.0 90 < th dose independent rect. 8 7
46 71.21 wind 7.0 90 < th dose independent rect. 8 7
48 71.27 temperature 10.0 270 > th dose dependent rect. 20 16
54 71.53 temperature 15.0 270 > th dose independent rect. 7 19
59 71.62 wind 9.0 90 < th dose dependent rect. 9 6
62 71.79 humidity 90.0 10 < th dose independent rect. 9 6
70 72.04 wind 9.0 270 < th dose dependent rect. 7 19
76 72.13 temperature 15.0 270 > th dose independent rect. 6 21
77 72.14 precipitation 0.1 90 < th dose independent rect. 8 7
78 72.14 precipitation 0.1 90 < th dose dependent rect. 8 7
95 72.45 atmosphere 1015.0 90 < th dose independent rect. 8 7
96 72.45 temperature 10.0 90 > th dose independent rect. 15 17
98 72.54 radiation 40.0 90 < th dose independent rect. 15 17
99 72.60 atmosphere 995.0 90 > th dose independent rect. 8 7
112 72.83 wind 7.0 270 < th dose independent rect. 7 19
113 72.84 temperature 20.0 10 > th dose independent rect. 9 6
114 72.86 radiation 1.0 270 > th dose independent rect. 7 7
118 72.90 wind 9.0 90 < th dose independent rect. 15 17
126 72.95 precipitation 0.1 90 < th dose independent rect. 15 17
127 72.95 precipitation 0.1 90 < th dose dependent rect. 15 17
130 73.02 temperature 15.0 270 > th dose independent rect. 8 17
131 73.03 wind 7.0 270 < th dose independent rect. 6 21
132 73.05 wind 7.0 10 < th dose independent rect. 9 6
134 73.05 atmosphere 995.0 90 > th dose independent rect. 15 17
157 73.30 precipitation 0.1 270 < th dose independent rect. 2 5
158 73.30 precipitation 0.1 270 < th dose dependent rect. 2 5
159 73.32 wind 5.0 270 < th dose independent rect. 2 5
173 73.42 wind 7.0 90 < th dose independent rect. 9 19
176 73.48 wind 5.0 270 < th dose independent rect. 3 3
181 73.54 precipitation 0.1 270 < th dose independent rect. 3 3
184 73.54 precipitation 0.1 270 < th dose dependent rect. 3 3
207 73.74 wind 9.0 270 < th dose dependent rect. 6 21
209 73.76 humidity 60.0 270 > th dose independent rect. 18 9
210 73.78 temperature 10.0 10 > th dose independent rect. 9 6
212 73.78 atmosphere 995.0 10 > th dose independent rect. 9 6
213 73.78 atmosphere 1015.0 10 < th dose independent rect. 9 6
214 73.78 precipitation 0.1 10 < th dose independent rect. 9 6
216 73.78 temperature 10.0 10 > th dose independent rect. 15 18
217 73.78 precipitation 0.1 10 < th dose dependent rect. 9 6
230 73.86 temperature 10.0 270 > th dose independent rect. 2 5
232 73.86 temperature 30.0 270 < th dose independent rect. 2 5
233 73.86 humidity 50.0 270 > th dose independent rect. 2 5
235 73.86 atmosphere 995.0 270 > th dose independent rect. 2 5
236 73.86 atmosphere 1015.0 270 < th dose independent rect. 2 5
237 73.86 radiation 40.0 270 < th dose independent rect. 2 5
238 73.86 precipitation 0.1 10 < th dose independent rect. 15 18
240 73.86 precipitation 0.1 10 < th dose dependent rect. 15 18
251 73.93 radiation 1.0 270 < th dose independent rect. 18 9
265 74.00 radiation 1.0 10 > th dose independent rect. 9 6
268 74.02 temperature 15.0 270 > th dose independent rect. 18 9
271 74.04 temperature 30.0 270 < th dose independent rect. 18 9
272 74.04 radiation 10.0 270 < th dose dependent rect. 18 9
277 74.07 wind 9.0 270 < th dose independent rect. 18 9
279 74.08 wind 5.0 270 < th dose independent rect. 8 3
283 74.09 radiation 40.0 270 < th dose dependent rect. 2 5
290 74.12 temperature 10.0 1440 > th dose independent rect. 10 6
299 74.12 temperature 10.0 270 > th dose independent rect. 3 15
300 74.12 atmosphere 1015.0 270 < th dose independent rect. 3 15
301 74.12 temperature 10.0 1440 > th dose independent rect. 16 18
316 74.20 temperature 10.0 270 > th dose independent rect. 3 3
318 74.20 temperature 30.0 270 < th dose independent rect. 3 3
319 74.20 humidity 50.0 270 > th dose independent rect. 3 3
322 74.20 atmosphere 995.0 270 > th dose independent rect. 3 3
323 74.20 atmosphere 1015.0 270 < th dose independent rect. 3 3
324 74.20 radiation 20.0 270 < th dose independent rect. 3 3
330 74.21 wind 9.0 10 < th dose independent rect. 15 18
339 74.25 wind 7.0 10 < th dose independent rect. 9 20
351 74.30 atmosphere 995.0 10 > th dose independent rect. 15 18
352 74.30 wind 9.0 270 < th dose dependent rect. 8 3
376 74.37 wind 5.0 270 < th dose independent rect. 9 1
381 74.41 humidity 50.0 270 > th dose independent rect. 7 7
382 74.41 radiation 40.0 270 < th dose dependent rect. 3 3
389 74.48 atmosphere 995.0 270 > th dose independent rect. 18 9
406 74.55 precipitation 0.1 270 < th dose independent rect. 7 19
408 74.55 precipitation 0.1 270 < th dose dependent rect. 7 19
440 74.66 wind 1.0 270 > th dose independent rect. 13 18
443 74.68 wind 1.0 90 > th dose independent rect. 8 7
454 74.75 temperature 10.0 10 > th dose dependent rect. 9 15
469 74.85 wind 9.0 270 < th dose dependent rect. 9 1
473 74.87 precipitation 0.1 270 < th dose independent rect. 3 15
475 74.87 precipitation 0.1 270 < th dose dependent rect. 3 15
509 75.04 precipitation 0.1 270 < th dose independent rect. 6 21
510 75.04 precipitation 0.1 270 < th dose dependent rect. 6 21
515 75.07 wind 9.0 270 < th dose dependent rect. 3 3
522 75.10 humidity 50.0 270 > th dose independent rect. 7 19
531 75.13 wind 1.0 10 > th dose independent rect. 9 6
573 75.24 humidity 90.0 270 < th dose independent rect. 9 2
578 75.26 wind 9.0 270 < th dose dependent rect. 2 5
586 75.27 radiation 1.0 270 < th dose independent rect. 3 8
603 75.31 atmosphere 1015.0 270 < th dose independent rect. 7 19
639 75.38 humidity 50.0 270 > th dose dependent rect. 18 8
645 75.40 radiation 1.0 270 < th dose dependent rect. 3 8
657 75.45 temperature 15.0 270 > th dose independent rect. 9 1
727 75.54 radiation 1.0 270 > th dose independent rect. 9 1
742 75.57 humidity 50.0 10 > th dose independent rect. 15 18
772 75.64 wind 9.0 270 < th dose independent rect. 3 15
779 75.68 precipitation 0.1 270 < th dose independent rect. 18 9
781 75.68 precipitation 0.1 270 < th dose dependent rect. 18 9
788 75.70 temperature 20.0 270 > th dose independent rect. 8 3
801 75.75 atmosphere 995.0 270 > th dose independent rect. 3 15
808 75.78 radiation 1.0 10 > th dose independent rect. 5 4
855 75.89 humidity 50.0 270 > th dose dependent rect. 3 3
902 75.99 radiation 40.0 90 < th dose dependent rect. 15 18
919 76.03 wind 1.0 270 > th dose independent rect. 2 5
969 76.14 humidity 50.0 270 > th dose dependent rect. 2 5
983 76.17 wind 7.0 10 < th dose independent rect. 9 17