Os07g0641500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Reverse transcriptase (Fragment).
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Os07g0641500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Reverse transcriptase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.21 | 0.339 | 3.36 | 0.251 | 0.168 | 0.182 | -1.98 | -1.84 | -0.0268 | 11.3 | 0.28 | 82 | -- | -- |
| 54.55 | 0.347 | 3.37 | 0.133 | 0.0897 | 0.0439 | -0.315 | -- | -0.0608 | 4.91 | 21.73 | 6 | -- | -- |
| 54.52 | 0.347 | 3.37 | 0.137 | 0.107 | 0.0751 | -- | -0.202 | -0.0591 | 7.35 | 0.28 | 82 | -- | -- |
| 54.45 | 0.344 | 3.37 | 0.123 | 0.0896 | 0.125 | -- | -- | -0.0522 | 9.56 | 0.0257 | 128 | -- | -- |
| 54.43 | 0.344 | 3.37 | 0.143 | -- | 0.0828 | -- | -0.273 | -0.0563 | -- | 0.01 | 151 | -- | -- |
| 54.67 | 0.347 | 3.37 | 0.125 | 0.106 | -- | -0.298 | -- | -0.0623 | 4.32 | -- | -- | -- | -- |
| 54.91 | 0.347 | 3.37 | 0.128 | 0.104 | -- | -- | -- | -0.0607 | 4.03 | -- | -- | -- | -- |
| 54.83 | 0.345 | 3.37 | 0.14 | -- | 0.115 | -- | -- | -0.0521 | -- | 0.231 | 508 | -- | -- |
| 54.92 | 0.345 | 3.37 | -- | 0.0996 | 0.132 | -- | -- | -0.0662 | 10.2 | 1.972e-06 | 128 | -- | -- |
| 55.5 | 0.348 | 3.37 | 0.132 | -- | -- | -- | -- | -0.0579 | -- | -- | -- | -- | -- |
| 55.34 | 0.348 | 3.37 | -- | 0.106 | -- | -- | -- | -0.0749 | 4.02 | -- | -- | -- | -- |
| 55.27 | 0.346 | 3.37 | -- | -- | 0.109 | -- | -- | -0.0676 | -- | 7.5 | 441 | -- | -- |
| 55.96 | 0.349 | 3.37 | -- | -- | -- | -- | -- | -0.0726 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.98 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 51.00 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 6 | 51.12 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 8 | 51.17 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 12 | 51.22 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 15 | 51.26 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 28 | 51.30 | wind | 5.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 31 | 51.30 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 22 | 11 |
| 32 | 51.30 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 40 | 51.33 | wind | 5.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 42 | 51.35 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 12 |
| 56 | 51.44 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 68 | 51.48 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 70 | 51.49 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 94 | 51.58 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 9 |
| 120 | 51.71 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 122 | 51.71 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 2 |
| 126 | 51.73 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 150 | 51.77 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 151 | 51.77 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 156 | 51.78 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 159 | 51.78 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 176 | 51.80 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 178 | 51.80 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 196 | 51.83 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 9 |
| 199 | 51.83 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 209 | 51.85 | radiation | 1.0 | 30 | < th | dose dependent | sin | 3 | NA |
| 224 | 51.87 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 276 | 51.93 | wind | 7.0 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 278 | 51.93 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 11 | 10 |
| 283 | 51.93 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 285 | 51.94 | wind | 1.0 | 720 | > th | dose independent | rect. | 9 | 4 |
| 311 | 51.96 | wind | 5.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 326 | 51.96 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 336 | 51.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 11 |
| 340 | 51.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 11 |
| 347 | 51.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 11 | 10 |
| 362 | 51.99 | wind | 7.0 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 376 | 52.00 | wind | 5.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 378 | 52.00 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 414 | 52.02 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 437 | 52.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 495 | 52.06 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 497 | 52.07 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 521 | 52.08 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 576 | 52.10 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 599 | 52.12 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 15 |
| 620 | 52.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 656 | 52.14 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 673 | 52.14 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 715 | 52.16 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 14 |
| 735 | 52.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 740 | 52.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 758 | 52.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 759 | 52.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 771 | 52.18 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 779 | 52.18 | wind | 3.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 791 | 52.19 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 793 | 52.19 | wind | 9.0 | 720 | < th | dose independent | rect. | 9 | 4 |
| 831 | 52.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 12 |
| 835 | 52.20 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 842 | 52.20 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 877 | 52.22 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 899 | 52.22 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 1 | 20 |
| 920 | 52.22 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 921 | 52.22 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 935 | 52.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 11 |