Os07g0641200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CaMK1.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0641200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to CaMK1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.08 | 0.245 | 10.2 | -0.294 | 0.824 | -0.768 | -0.0502 | -0.356 | 0.0319 | 3.13 | 26.47 | 9 | -- | -- |
| 27.26 | 0.245 | 10.2 | -0.351 | 0.822 | -0.745 | -0.194 | -- | 0.0192 | 3.09 | 26.63 | 8 | -- | -- |
| 27.09 | 0.242 | 10.2 | -0.29 | 0.823 | -0.771 | -- | -0.388 | 0.0329 | 3.14 | 26.45 | 8 | -- | -- |
| 27.35 | 0.244 | 10.2 | -0.352 | 0.825 | -0.75 | -- | -- | 0.0183 | 3.15 | 26.67 | 9 | -- | -- |
| 55.73 | 0.348 | 10.1 | -0.198 | -- | -0.383 | -- | -0.225 | 0.148 | -- | 23.99 | 21 | -- | -- |
| 35.51 | 0.279 | 10.1 | -0.175 | 0.632 | -- | -0.159 | -- | 0.183 | 3.47 | -- | -- | -- | -- |
| 35.59 | 0.279 | 10.1 | -0.173 | 0.632 | -- | -- | -- | 0.184 | 3.54 | -- | -- | -- | -- |
| 46.96 | 0.319 | 10.2 | -0.388 | -- | -0.811 | -- | -- | 0.0535 | -- | 38.89 | 1171 | -- | -- |
| 30.26 | 0.258 | 10.2 | -- | 0.778 | -0.611 | -- | -- | 0.0854 | 3.19 | 26.5 | 8 | -- | -- |
| 57.89 | 0.356 | 10.1 | -0.146 | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
| 36.37 | 0.282 | 10.1 | -- | 0.629 | -- | -- | -- | 0.203 | 3.54 | -- | -- | -- | -- |
| 50.45 | 0.331 | 10.2 | -- | -- | -0.646 | -- | -- | 0.124 | -- | 55.9 | 1156 | -- | -- |
| 58.45 | 0.357 | 10.1 | -- | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 8 | 25.74 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 15 | 25.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 52 | 26.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 55 | 26.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 66 | 26.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 72 | 26.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 80 | 26.68 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 172 | 27.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 188 | 27.18 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 199 | 27.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 201 | 27.21 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 204 | 27.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 208 | 27.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 212 | 27.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 221 | 27.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 226 | 27.27 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 4 |
| 229 | 27.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 235 | 27.29 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 245 | 27.32 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 344 | 27.61 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 356 | 27.64 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 385 | 27.70 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 426 | 27.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 11 |
| 494 | 27.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 672 | 28.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 731 | 28.31 | wind | 9 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 764 | 28.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 765 | 28.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 819 | 28.42 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 842 | 28.44 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 885 | 28.48 | temperature | 25 | 30 | < th | dose dependent | sin | 18 | NA |
| 894 | 28.49 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 14 |
| 936 | 28.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 941 | 28.53 | wind | 1 | 30 | > th | dose independent | sin | 1 | NA |