Os07g0640400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0640400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.65 | 0.251 | 2.86 | -0.231 | 0.00204 | -7.05 | -0.328 | -34 | 0.077 | 5.43 | 7.021 | 90 | 18 | 1.03 |
| 51.38 | 0.334 | 2.92 | -0.189 | 0.0694 | 0.723 | -0.27 | -- | 0.0413 | 19.3 | 5.624 | 23 | 19.9 | 1.56 |
| 28.85 | 0.25 | 2.87 | -0.232 | 0.014 | -6.98 | -- | -33.5 | 0.0781 | 23 | 7.007 | 89 | 18 | 1.07 |
| 46.99 | 0.319 | 2.93 | -0.185 | 0.0717 | 1.31 | -- | -- | 0.0895 | 18.8 | 3.973 | 20 | 19.7 | 0.133 |
| 28.86 | 0.25 | 2.87 | -0.231 | -- | -6.94 | -- | -33.4 | 0.0772 | -- | 7.013 | 89 | 18 | 1.07 |
| 51.58 | 0.337 | 2.92 | -0.197 | 0.0747 | -- | -0.309 | -- | 0.0454 | 20 | -- | -- | -- | -- |
| 51.86 | 0.337 | 2.92 | -0.188 | 0.0756 | -- | -- | -- | 0.0453 | 19.7 | -- | -- | -- | -- |
| 43.92 | 0.309 | 2.91 | -0.144 | -- | 2.28 | -- | -- | 0.0759 | -- | 4.279 | 33 | 19.7 | 0.0167 |
| 44.41 | 0.31 | 2.91 | -- | 0.0268 | 2.29 | -- | -- | 0.07 | 19.3 | 4.256 | 25 | 19.7 | 0.00112 |
| 52.17 | 0.337 | 2.92 | -0.189 | -- | -- | -- | -- | 0.0442 | -- | -- | -- | -- | -- |
| 52.79 | 0.34 | 2.92 | -- | 0.0771 | -- | -- | -- | 0.0662 | 19.5 | -- | -- | -- | -- |
| 34.26 | 0.273 | 2.89 | -- | -- | 3.39 | -- | -- | 0.0345 | -- | 5.308 | 75 | 19.2 | 0.184 |
| 53.11 | 0.34 | 2.92 | -- | -- | -- | -- | -- | 0.0652 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.65 | wind | 7 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 29.04 | radiation | 1 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 14 | 31.88 | wind | 7 | 90 | > th | dose independent | rect. | 18 | 1 |
| 16 | 35.17 | radiation | 1 | 90 | > th | dose independent | rect. | 18 | 1 |
| 27 | 37.71 | wind | 5 | 10 | > th | dose independent | rect. | 20 | 1 |
| 30 | 38.86 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 38 | 38.88 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 5 |
| 45 | 39.36 | wind | 9 | 270 | > th | dose dependent | sin | 12 | NA |
| 67 | 40.58 | wind | 9 | 270 | < th | dose independent | sin | 12 | NA |
| 68 | 40.60 | wind | 9 | 270 | > th | dose independent | sin | 12 | NA |
| 70 | 40.92 | wind | 9 | 270 | > th | dose independent | rect. | 16 | 18 |
| 88 | 40.98 | wind | 9 | 270 | > th | dose independent | rect. | 17 | 9 |
| 104 | 40.99 | wind | 9 | 270 | > th | dose independent | rect. | 17 | 6 |
| 122 | 41.16 | wind | 9 | 270 | > th | dose independent | sin | 15 | NA |
| 127 | 41.24 | wind | 9 | 270 | < th | dose independent | sin | 15 | NA |
| 336 | 44.37 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 403 | 45.07 | humidity | 70 | 270 | < th | dose independent | rect. | 16 | 1 |
| 441 | 45.79 | humidity | 80 | 10 | < th | dose independent | rect. | 20 | 1 |
| 482 | 46.34 | humidity | 70 | 270 | < th | dose independent | rect. | 16 | 4 |
| 507 | 46.67 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 19 | 1 |
| 604 | 47.42 | humidity | 90 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 666 | 47.68 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 728 | 47.81 | wind | 9 | 270 | > th | dose independent | no | NA | NA |
| 872 | 48.04 | wind | 9 | 270 | < th | dose independent | no | NA | NA |
| 904 | 48.17 | humidity | 90 | 270 | < th | dose dependent | rect. | 16 | 4 |