Os07g0640200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Carbohydrate kinase, FGGY family protein.
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Os07g0640200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Carbohydrate kinase, FGGY family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.94 | 0.525 | 9.85 | -0.985 | 0.921 | 1.59 | -0.332 | -2.34 | -0.46 | 22.3 | 25 | 249 | -- | -- |
| 126.67 | 0.524 | 9.83 | -0.705 | 0.913 | 1.36 | -0.319 | -- | -0.43 | 22 | 24.17 | 259 | -- | -- |
| 125.36 | 0.521 | 9.85 | -0.967 | 0.936 | 1.59 | -- | -2.31 | -0.458 | 22.2 | 25 | 235 | -- | -- |
| 127.04 | 0.525 | 9.82 | -0.688 | 0.916 | 1.34 | -- | -- | -0.424 | 22 | 24.16 | 259 | -- | -- |
| 156.38 | 0.582 | 9.86 | -1.15 | -- | 1.85 | -- | -1.91 | -0.612 | -- | 23.24 | 540 | -- | -- |
| 157.82 | 0.589 | 9.8 | -0.444 | 1.21 | -- | 0.0419 | -- | -0.274 | 20 | -- | -- | -- | -- |
| 157.82 | 0.588 | 9.8 | -0.445 | 1.21 | -- | -- | -- | -0.274 | 20 | -- | -- | -- | -- |
| 157.71 | 0.585 | 9.81 | -0.798 | -- | 1.68 | -- | -- | -0.491 | -- | 23.66 | 557 | -- | -- |
| 138.43 | 0.548 | 9.79 | -- | 0.962 | 1.19 | -- | -- | -0.276 | 21.6 | 25.38 | 235 | -- | -- |
| 238.29 | 0.721 | 9.77 | -0.457 | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
| 163.05 | 0.597 | 9.79 | -- | 1.22 | -- | -- | -- | -0.225 | 20 | -- | -- | -- | -- |
| 172.91 | 0.612 | 9.78 | -- | -- | 1.55 | -- | -- | -0.346 | -- | 24.5 | 537 | -- | -- |
| 243.79 | 0.729 | 9.76 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 4 | 111.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 14 | 112.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 23 | 114.24 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 24 | 114.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 28 | 114.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 58 | 116.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 70 | 116.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 71 | 116.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 103 | 117.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 113 | 117.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 139 | 118.01 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 228 | 119.52 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 352 | 121.29 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 407 | 122.06 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 7 |
| 474 | 123.00 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 617 | 124.09 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 8 |
| 623 | 124.13 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 628 | 124.17 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 6 |
| 747 | 124.94 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 763 | 125.05 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 17 |
| 781 | 125.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 785 | 125.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 786 | 125.15 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 871 | 125.57 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 875 | 125.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 957 | 126.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 999 | 126.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 1000 | 126.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |