Os07g0639500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase precursor (EC 1.11.1.7).
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Os07g0639500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase precursor (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 349.36 | 0.878 | 3.4 | 0.293 | 0.227 | -0.415 | 0.402 | -1.1 | -0.292 | 16.4 | 1005 | 1192 | -- | -- |
| 353.45 | 0.876 | 3.41 | 0.294 | 0.239 | -0.443 | 0.321 | -- | -0.26 | 16.4 | 1005 | 1166 | -- | -- |
| 349.8 | 0.871 | 3.4 | 0.296 | 0.232 | -0.417 | -- | -1.07 | -0.289 | 16.4 | 1005 | 1170 | -- | -- |
| 353.69 | 0.876 | 3.41 | 0.3 | 0.241 | -0.45 | -- | -- | -0.261 | 16.3 | 1005 | 1174 | -- | -- |
| 352.61 | 0.875 | 3.4 | 0.289 | -- | -0.409 | -- | -1.13 | -0.298 | -- | 1005 | 1246 | -- | -- |
| 364.23 | 0.895 | 3.45 | 0.314 | 0.219 | -- | 0.407 | -- | -0.424 | 16.7 | -- | -- | -- | -- |
| 364.66 | 0.894 | 3.44 | 0.316 | 0.222 | -- | -- | -- | -0.421 | 16.7 | -- | -- | -- | -- |
| 356.72 | 0.88 | 3.41 | 0.29 | -- | -0.44 | -- | -- | -0.271 | -- | 1005 | 1192 | -- | -- |
| 356.04 | 0.879 | 3.42 | -- | 0.231 | -0.456 | -- | -- | -0.293 | 16.4 | 1005 | 1192 | -- | -- |
| 367.28 | 0.895 | 3.44 | 0.308 | -- | -- | -- | -- | -0.427 | -- | -- | -- | -- | -- |
| 367.3 | 0.897 | 3.45 | -- | 0.216 | -- | -- | -- | -0.457 | 16.7 | -- | -- | -- | -- |
| 358.91 | 0.882 | 3.41 | -- | -- | -0.449 | -- | -- | -0.3 | -- | 1005 | 1240 | -- | -- |
| 369.78 | 0.898 | 3.45 | -- | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 343.34 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 2 | 344.88 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 3 | 344.88 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 345.49 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 9 | 346.01 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 10 | 346.02 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 14 | 346.40 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 16 | 346.47 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 32 | 346.99 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 40 | 347.53 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 49 | 347.70 | atmosphere | 1005.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 51 | 347.74 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 10 | 22 |
| 53 | 347.80 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 57 | 347.84 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 59 | 347.86 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 62 | 347.88 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 66 | 347.93 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 97 | 348.30 | wind | 3.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 99 | 348.31 | atmosphere | 1000.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 104 | 348.41 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 106 | 348.44 | wind | 1.0 | 720 | > th | dose dependent | rect. | 10 | 3 |
| 111 | 348.48 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 17 | 17 |
| 112 | 348.49 | wind | 3.0 | 720 | > th | dose independent | rect. | 10 | 3 |
| 118 | 348.55 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 128 | 348.69 | wind | 3.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 164 | 348.96 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 17 |
| 177 | 349.05 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 191 | 349.14 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 7 |
| 222 | 349.28 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 224 | 349.29 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 241 | 349.37 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 7 |
| 246 | 349.37 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 7 |
| 268 | 349.43 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 274 | 349.46 | atmosphere | 1005.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 302 | 349.56 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 307 | 349.58 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 17 | 19 |
| 331 | 349.68 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 23 | 3 |
| 334 | 349.68 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 23 | 3 |
| 346 | 349.70 | atmosphere | 1000.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 352 | 349.72 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 402 | 349.88 | wind | 1.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 414 | 349.92 | atmosphere | 1015.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 438 | 349.99 | atmosphere | 1015.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 453 | 350.02 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 464 | 350.05 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 471 | 350.07 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 7 |
| 516 | 350.16 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 11 | 22 |
| 529 | 350.18 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 23 | 14 |
| 553 | 350.23 | atmosphere | 1010.0 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 557 | 350.23 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 573 | 350.27 | atmosphere | 1005.0 | 1440 | > th | dose independent | no | NA | NA |
| 586 | 350.28 | wind | 7.0 | 10 | > th | dose dependent | rect. | 4 | 6 |
| 626 | 350.35 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 633 | 350.37 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 11 | NA |
| 693 | 350.48 | wind | 7.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 700 | 350.49 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 811 | 350.67 | atmosphere | 1010.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 845 | 350.74 | wind | 7.0 | 10 | > th | dose independent | rect. | 4 | 6 |
| 875 | 350.79 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 14 | 23 |
| 967 | 350.93 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 22 |
| 983 | 350.96 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 995 | 350.96 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 24 | 23 |