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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0639400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0395) R2 : 0.00349
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.105 (0.0832) R2dN8 : 0.00451 R2N8 : 0.00349
σ : 0.744
deviance : 254.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.21 0.725 3.07 -0.449 0.0344 -0.72 -0.856 -4.28 -0.0088 23.7 7 4702 -- --
243.08 0.726 3.21 -0.744 0.0845 -0.715 -0.848 -- -0.162 23.5 5.9 19010 -- --
241.29 0.723 3.06 -0.426 0.0442 -0.703 -- -4.24 -5.69e-07 2.56 7 4718 -- --
244.97 0.729 3.23 -0.699 0.155 -0.843 -- -- -0.296 0.143 5.498 21129 -- --
241.43 0.724 3.07 -0.422 -- -0.718 -- -4.17 -0.0051 -- 7.081 4744 -- --
249.61 0.741 3.2 -0.265 0.0653 -- -0.82 -- -0.134 23.2 -- -- -- --
252.02 0.743 3.19 -0.235 0.115 -- -- -- -0.134 2.86 -- -- -- --
245.45 0.73 3.23 -0.753 -- -0.878 -- -- -0.3 -- 5.528 21157 -- --
251.07 0.738 3.19 -- 0.0528 -0.529 -- -- -0.0883 0.0969 10.7 23545 -- --
252.78 0.743 3.19 -0.23 -- -- -- -- -0.131 -- -- -- -- --
253.47 0.745 3.19 -- 0.11 -- -- -- -0.107 2.85 -- -- -- --
244.33 0.728 3.17 -- -- -0.429 -- -- -0.00326 -- 11.5 19941 -- --
254.17 0.744 3.19 -- -- -- -- -- -0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.04 atmosphere 1000.0 10 > th dose independent rect. 3 23
2 231.17 temperature 20.0 90 > th dose independent rect. 1 2
4 231.99 temperature 20.0 10 > th dose independent rect. 2 1
5 232.22 wind 3.0 10 < th dose independent rect. 2 1
7 232.56 humidity 80.0 10 > th dose independent rect. 2 1
8 232.63 atmosphere 1015.0 10 < th dose dependent rect. 2 1
12 232.80 temperature 10.0 10 > th dose independent rect. 2 1
14 232.80 temperature 30.0 10 < th dose independent rect. 2 1
15 232.80 humidity 50.0 10 > th dose independent rect. 2 1
18 232.80 atmosphere 995.0 10 > th dose independent rect. 2 1
19 232.80 atmosphere 1010.0 10 < th dose independent rect. 2 1
21 232.80 radiation 1.0 10 < th dose independent rect. 2 1
26 232.80 precipitation 0.1 10 < th dose independent rect. 2 1
27 232.80 temperature 10.0 10 > th dose independent rect. 3 23
28 232.80 humidity 50.0 10 > th dose dependent rect. 2 1
29 232.80 radiation 1.0 10 < th dose dependent rect. 2 1
34 232.80 precipitation 0.1 10 < th dose dependent rect. 2 1
40 232.87 temperature 10.0 10 > th dose dependent rect. 2 1
41 232.89 wind 9.0 10 < th dose dependent rect. 2 1
46 233.03 atmosphere 995.0 10 > th dose dependent rect. 2 1
47 233.04 humidity 50.0 30 > th dose independent rect. 3 23
50 233.15 wind 1.0 30 > th dose independent rect. 2 1
51 233.20 precipitation 0.1 30 < th dose independent rect. 3 23
53 233.20 precipitation 0.1 30 < th dose dependent rect. 3 23
54 233.22 temperature 30.0 10 < th dose dependent rect. 2 1
57 233.27 temperature 15.0 90 > th dose dependent rect. 1 2
58 233.31 wind 1.0 90 < th dose dependent rect. 13 1
98 233.61 temperature 30.0 10 > th dose independent rect. 14 1
132 234.14 atmosphere 995.0 43200 < th dose dependent rect. 15 7
134 234.22 radiation 10.0 43200 < th dose dependent rect. 3 1
138 234.24 wind 9.0 1440 < th dose independent rect. 3 1
139 234.24 temperature 10.0 1440 > th dose independent rect. 3 1
142 234.24 temperature 30.0 1440 < th dose independent rect. 3 1
146 234.24 humidity 50.0 1440 > th dose independent rect. 3 1
155 234.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
156 234.24 radiation 1.0 1440 < th dose independent rect. 3 1
176 234.24 temperature 10.0 1440 > th dose independent rect. 4 23
179 234.24 radiation 1.0 1440 < th dose dependent rect. 3 1
193 234.33 atmosphere 995.0 43200 > th dose independent rect. 14 8
195 234.40 wind 1.0 90 < th dose independent rect. 13 1
200 234.70 atmosphere 995.0 43200 < th dose independent rect. 14 8
206 235.20 radiation 1.0 43200 < th dose dependent rect. 1 3
214 235.66 radiation 1.0 90 < th dose independent rect. 14 1
215 235.66 radiation 1.0 90 < th dose dependent rect. 14 1
219 236.04 temperature 20.0 90 > th dose independent rect. 24 16
220 236.14 wind 7.0 4320 > th dose independent rect. 15 14
224 236.16 wind 7.0 4320 > th dose independent rect. 16 4
230 236.28 atmosphere 995.0 43200 > th dose independent rect. 15 3
233 236.38 atmosphere 995.0 43200 > th dose independent rect. 13 10
237 236.42 wind 7.0 4320 < th dose independent rect. 15 14
241 236.49 atmosphere 995.0 43200 < th dose independent rect. 15 3
248 236.57 atmosphere 995.0 43200 < th dose independent rect. 13 10
253 236.62 wind 7.0 4320 < th dose independent rect. 16 4
273 236.89 wind 7.0 4320 > th dose dependent rect. 15 14
274 236.89 radiation 40.0 90 < th dose dependent rect. 13 14
281 236.95 atmosphere 995.0 43200 < th dose dependent rect. 15 4
293 237.07 radiation 40.0 90 < th dose independent rect. 13 14
312 237.24 wind 7.0 4320 > th dose independent sin 14 NA
316 237.26 wind 7.0 4320 > th dose independent rect. 15 9
322 237.29 wind 9.0 30 < th dose independent rect. 3 23
324 237.31 wind 7.0 4320 < th dose independent sin 14 NA
343 237.45 radiation 30.0 10 < th dose independent rect. 13 14
348 237.48 wind 7.0 4320 < th dose independent rect. 15 9
350 237.49 wind 9.0 43200 > th dose independent rect. 12 2
353 237.49 wind 7.0 4320 > th dose dependent rect. 15 5
376 237.62 atmosphere 995.0 30 > th dose dependent rect. 3 22
402 237.75 humidity 60.0 14400 > th dose independent rect. 18 15
412 237.80 humidity 60.0 14400 < th dose independent rect. 18 15
427 237.88 humidity 60.0 14400 < th dose dependent rect. 18 15
451 238.02 wind 9.0 43200 < th dose independent rect. 12 2
457 238.06 temperature 20.0 270 > th dose independent rect. 22 5
458 238.06 temperature 20.0 90 > th dose independent rect. 21 19
470 238.11 wind 7.0 4320 > th dose dependent rect. 15 9
492 238.23 humidity 80.0 14400 > th dose independent rect. 24 1
510 238.32 wind 9.0 43200 > th dose dependent rect. 11 3
536 238.43 wind 7.0 4320 > th dose dependent rect. 16 1
537 238.43 temperature 15.0 270 > th dose dependent rect. 22 5
572 238.51 wind 1.0 30 > th dose independent rect. 3 23
576 238.53 precipitation 0.1 43200 > th dose dependent rect. 17 15
578 238.55 humidity 50.0 14400 > th dose independent rect. 17 18
586 238.58 humidity 50.0 14400 < th dose dependent rect. 16 20
590 238.61 atmosphere 995.0 43200 > th dose independent sin 19 NA
601 238.66 precipitation 0.1 43200 > th dose dependent rect. 20 12
611 238.71 wind 3.0 30 < th dose dependent rect. 13 14
617 238.73 temperature 30.0 90 < th dose independent rect. 13 14
624 238.75 wind 7.0 4320 > th dose dependent sin 14 NA
634 238.82 precipitation 0.1 43200 < th dose independent rect. 20 12
636 238.82 precipitation 0.1 43200 < th dose dependent rect. 20 12
640 238.83 precipitation 0.1 43200 > th dose independent rect. 20 12
641 238.84 atmosphere 1005.0 30 < th dose independent rect. 9 8
646 238.84 humidity 70.0 14400 < th dose dependent rect. 19 13
650 238.86 temperature 30.0 10 > th dose independent rect. 13 21
689 238.93 radiation 1.0 43200 < th dose dependent rect. 23 5
706 238.96 precipitation 0.1 43200 > th dose dependent rect. 2 16
720 239.01 atmosphere 1000.0 43200 > th dose independent rect. 7 1
721 239.01 atmosphere 1000.0 43200 < th dose independent rect. 6 1
722 239.01 wind 9.0 14400 > th dose independent rect. 19 16
739 239.05 atmosphere 1005.0 10 < th dose independent rect. 12 4
745 239.06 humidity 90.0 14400 < th dose dependent rect. 24 1
750 239.07 humidity 50.0 14400 < th dose dependent rect. 17 18
780 239.13 humidity 50.0 14400 < th dose dependent rect. 10 1
781 239.14 atmosphere 1000.0 43200 > th dose independent rect. 9 1
806 239.18 wind 9.0 14400 < th dose independent rect. 19 16
811 239.19 humidity 60.0 10 < th dose independent rect. 15 22
818 239.22 atmosphere 1000.0 43200 < th dose dependent rect. 8 12
819 239.23 atmosphere 995.0 43200 < th dose independent sin 18 NA
831 239.26 atmosphere 1000.0 43200 > th dose independent rect. 6 6
832 239.26 atmosphere 1000.0 43200 < th dose independent rect. 6 6
844 239.27 precipitation 0.1 43200 > th dose independent rect. 17 15
861 239.30 wind 3.0 43200 > th dose independent rect. 2 1
863 239.30 precipitation 0.1 43200 < th dose independent rect. 17 15
864 239.30 precipitation 0.1 43200 < th dose dependent rect. 17 15
866 239.31 wind 3.0 30 < th dose dependent rect. 22 5
875 239.32 wind 1.0 14400 < th dose dependent rect. 20 1
921 239.38 wind 9.0 14400 > th dose dependent rect. 19 16
929 239.39 wind 9.0 14400 > th dose dependent rect. 19 13
959 239.44 atmosphere 1015.0 14400 < th dose independent rect. 18 2
968 239.45 wind 1.0 30 < th dose independent rect. 13 14
972 239.45 radiation 10.0 43200 < th dose dependent rect. 9 3
978 239.46 atmosphere 1015.0 1440 < th dose independent rect. 5 6
979 239.46 atmosphere 1015.0 1440 > th dose independent rect. 24 14
984 239.48 atmosphere 1000.0 43200 < th dose independent rect. 11 1
985 239.48 atmosphere 1015.0 1440 < th dose independent rect. 8 3
994 239.49 atmosphere 1000.0 43200 > th dose independent rect. 11 1
999 239.50 humidity 80.0 14400 < th dose independent rect. 22 4