Os07g0639000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 1.
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Os07g0639000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.29 | 0.466 | 3.7 | 1.87 | 0.0687 | 83.4 | -0.496 | 176 | 0.0787 | 9.81 | 15 | 1457 | -- | -- |
| 100.14 | 0.47 | 2.81 | -0.0747 | 0.0504 | -0.0212 | -0.371 | -- | 0.0657 | 10.3 | 15 | 1457 | -- | -- |
| 98.62 | 0.463 | 3.6 | 1.59 | 0.0709 | 84.8 | -- | 179 | 0.0644 | 9.32 | 14.96 | 994 | -- | -- |
| 99.45 | 0.464 | 2.8 | 0.0339 | 0.036 | 0.323 | -- | -- | 0.14 | 8.96 | 20.67 | 3721 | -- | -- |
| 98.77 | 0.463 | 3.53 | 1.45 | -- | 85.3 | -- | 180 | 0.0691 | -- | 14.9 | 992 | -- | -- |
| 100.14 | 0.469 | 2.81 | -0.0738 | 0.0506 | -- | -0.374 | -- | 0.066 | 10.3 | -- | -- | -- | -- |
| 100.68 | 0.47 | 2.81 | -0.0895 | 0.0576 | -- | -- | -- | 0.0645 | 8.95 | -- | -- | -- | -- |
| 99.52 | 0.465 | 2.8 | 0.0697 | -- | 0.357 | -- | -- | 0.125 | -- | 20.5 | 3710 | -- | -- |
| 99.45 | 0.464 | 2.8 | -- | 0.0553 | 0.307 | -- | -- | 0.109 | 8.32 | 20.3 | 3710 | -- | -- |
| 100.87 | 0.469 | 2.82 | -0.0895 | -- | -- | -- | -- | 0.0649 | -- | -- | -- | -- | -- |
| 100.89 | 0.47 | 2.81 | -- | 0.0575 | -- | -- | -- | 0.0744 | 9.06 | -- | -- | -- | -- |
| 99.61 | 0.465 | 2.8 | -- | -- | 0.308 | -- | -- | 0.112 | -- | 20.4 | 3708 | -- | -- |
| 101.08 | 0.469 | 2.81 | -- | -- | -- | -- | -- | 0.0748 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.78 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 10 | 6 |
| 2 | 93.00 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 11 | 4 |
| 5 | 93.62 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 5 |
| 6 | 93.70 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 12 | 93.70 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 14 | 93.70 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 29 | 93.70 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 35 | 93.70 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 37 | 93.70 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 78 | 94.53 | wind | 5.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 79 | 94.53 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 84 | 94.53 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 97 | 94.53 | wind | 5.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 98 | 94.53 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 103 | 94.53 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 147 | 95.09 | wind | 5.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 149 | 95.10 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 152 | 95.13 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 156 | 95.14 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 157 | 95.16 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 160 | 95.17 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 163 | 95.19 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 167 | 95.22 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 170 | 95.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 173 | 95.24 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 177 | 95.24 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 184 | 95.24 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 185 | 95.24 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 205 | 95.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 209 | 95.24 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 210 | 95.26 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 212 | 95.26 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 214 | 95.26 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 215 | 95.26 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 219 | 95.26 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 221 | 95.26 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 226 | 95.26 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 227 | 95.26 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 228 | 95.26 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 229 | 95.26 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 234 | 95.26 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 236 | 95.27 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 239 | 95.28 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 252 | 95.38 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 266 | 95.49 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 269 | 95.53 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 274 | 95.55 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 278 | 95.60 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 345 | 96.14 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 348 | 96.14 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 370 | 96.29 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 371 | 96.30 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 372 | 96.32 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 376 | 96.35 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 377 | 96.35 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 378 | 96.35 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 383 | 96.39 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 386 | 96.40 | wind | 9.0 | 90 | > th | dose dependent | rect. | 16 | 18 |
| 387 | 96.41 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 388 | 96.41 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 413 | 96.44 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 416 | 96.44 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 420 | 96.44 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 422 | 96.44 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 427 | 96.44 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 429 | 96.44 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 430 | 96.44 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 432 | 96.44 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 437 | 96.44 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 442 | 96.49 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 462 | 96.52 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 3 |
| 504 | 96.64 | radiation | 10.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 507 | 96.66 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 512 | 96.71 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 526 | 96.84 | wind | 9.0 | 90 | > th | dose independent | sin | 13 | NA |
| 540 | 96.94 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 17 | 13 |
| 542 | 97.00 | wind | 9.0 | 90 | > th | dose dependent | sin | 13 | NA |
| 551 | 97.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 641 | 97.17 | wind | 9.0 | 90 | < th | dose independent | sin | 13 | NA |
| 646 | 97.19 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 686 | 97.27 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 698 | 97.31 | temperature | 20.0 | 30 | > th | dose independent | rect. | 11 | 6 |
| 699 | 97.32 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 793 | 97.42 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 835 | 97.48 | temperature | 15.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 838 | 97.48 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 840 | 97.48 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 855 | 97.51 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 857 | 97.52 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 859 | 97.54 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 860 | 97.54 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 886 | 97.59 | temperature | 15.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 896 | 97.59 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 909 | 97.61 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 919 | 97.63 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 4 | 1 |
| 923 | 97.63 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 928 | 97.65 | temperature | 15.0 | 720 | < th | dose independent | rect. | 24 | 5 |
| 937 | 97.65 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 939 | 97.66 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 941 | 97.67 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 945 | 97.67 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 964 | 97.69 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 970 | 97.70 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 979 | 97.70 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 984 | 97.70 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |