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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0638600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0231) R2 : 0.00148
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0399 (0.0486) R2dN8 : 0.00191 R2N8 : 0.00148
σ : 0.434
deviance : 86.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.42 0.429 2.9 -0.0255 0.107 0.247 -0.251 1.34 0.0369 9.48 48.66 16 -- --
84.5 0.428 2.89 -0.0205 0.114 0.449 -0.0828 -- 0.037 8.59 60 15 -- --
82.57 0.423 2.9 -0.0436 0.101 0.321 -- 1.51 0.0377 9.45 61.75 15 -- --
84.46 0.428 2.89 -0.0121 0.112 0.501 -- -- 0.0464 8.7 60 15 -- --
83.28 0.425 2.9 -0.0423 -- 0.381 -- 1.57 0.0396 -- 61.83 14 -- --
85.65 0.434 2.89 -0.00393 0.127 -- -0.0448 -- 0.0387 9.3 -- -- -- --
85.65 0.433 2.9 -0.00558 0.127 -- -- -- 0.0386 9.27 -- -- -- --
85.16 0.43 2.9 -0.0124 -- 0.543 -- -- 0.0479 -- 60 15 -- --
84.46 0.428 2.89 -- 0.112 0.5 -- -- 0.0471 8.71 60 15 -- --
86.6 0.435 2.9 -0.00613 -- -- -- -- 0.0392 -- -- -- -- --
85.65 0.433 2.89 -- 0.127 -- -- -- 0.0392 9.28 -- -- -- --
85.16 0.43 2.9 -- -- 0.542 -- -- 0.0491 -- 60 15 -- --
86.6 0.434 2.9 -- -- -- -- -- 0.0399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.30 radiation 20.0 90 < th dose independent rect. 10 1
2 80.41 atmosphere 1005.0 90 > th dose independent rect. 11 1
3 80.44 atmosphere 1005.0 10 > th dose independent rect. 11 2
7 80.66 radiation 20.0 270 < th dose dependent rect. 9 2
14 81.37 temperature 30.0 90 < th dose dependent rect. 10 1
15 81.41 humidity 60.0 90 > th dose independent rect. 11 1
31 81.69 temperature 30.0 10 < th dose independent rect. 11 2
32 81.70 temperature 30.0 90 < th dose independent rect. 11 1
38 81.79 humidity 80.0 90 > th dose dependent rect. 10 1
41 81.86 atmosphere 995.0 90 > th dose dependent rect. 11 1
42 81.87 temperature 30.0 10 < th dose dependent rect. 12 1
47 81.90 radiation 40.0 10 < th dose independent rect. 12 1
58 82.00 humidity 80.0 90 > th dose independent rect. 10 2
64 82.03 humidity 60.0 90 > th dose dependent rect. 10 3
67 82.05 humidity 50.0 90 > th dose dependent rect. 11 1
88 82.14 atmosphere 1010.0 10 < th dose independent rect. 13 22
113 82.31 atmosphere 1010.0 10 < th dose independent rect. 4 7
129 82.40 humidity 90.0 720 > th dose independent rect. 10 3
136 82.43 humidity 90.0 720 > th dose dependent rect. 10 3
141 82.48 precipitation 0.1 270 > th dose independent rect. 8 1
145 82.48 precipitation 0.1 270 > th dose dependent rect. 8 1
148 82.50 humidity 90.0 720 > th dose independent rect. 10 1
151 82.50 precipitation 0.1 720 > th dose independent rect. 9 4
156 82.50 precipitation 0.1 720 > th dose dependent rect. 9 4
158 82.51 atmosphere 1010.0 90 < th dose independent rect. 11 1
171 82.52 wind 7.0 10 < th dose independent rect. 13 22
188 82.57 radiation 40.0 10 < th dose dependent rect. 11 1
203 82.60 temperature 15.0 90 > th dose independent rect. 11 1
204 82.60 humidity 90.0 90 < th dose independent rect. 11 1
222 82.66 atmosphere 1010.0 10 < th dose independent rect. 1 10
250 82.73 wind 1.0 10 < th dose dependent rect. 11 1
260 82.75 precipitation 0.1 90 < th dose independent rect. 11 1
263 82.75 temperature 10.0 90 > th dose independent rect. 12 23
266 82.75 precipitation 0.1 90 < th dose dependent rect. 11 1
273 82.77 radiation 1.0 90 > th dose independent rect. 11 1
277 82.78 temperature 10.0 1440 > th dose independent rect. 12 2
281 82.78 atmosphere 995.0 1440 > th dose independent rect. 12 2
282 82.78 radiation 20.0 270 < th dose independent rect. 8 19
283 82.78 temperature 10.0 1440 > th dose independent rect. 14 22
288 82.79 wind 9.0 90 < th dose independent rect. 11 1
299 82.81 wind 9.0 10 < th dose independent rect. 11 2
314 82.82 wind 1.0 10 > th dose independent rect. 11 2
323 82.84 radiation 40.0 270 < th dose independent rect. 21 15
325 82.84 wind 1.0 270 < th dose dependent rect. 9 3
344 82.87 atmosphere 995.0 30 > th dose independent rect. 13 22
349 82.88 atmosphere 1005.0 270 > th dose independent rect. 8 4
353 82.89 wind 1.0 90 < th dose dependent rect. 11 1
359 82.90 radiation 20.0 270 < th dose independent rect. 8 17
362 82.90 precipitation 0.1 30 < th dose independent rect. 13 22
364 82.90 precipitation 0.1 30 < th dose dependent rect. 13 22
367 82.91 wind 1.0 270 < th dose independent rect. 9 3
371 82.91 radiation 40.0 270 < th dose dependent rect. 8 19
393 82.95 temperature 10.0 1440 > th dose independent rect. 4 8
396 82.95 atmosphere 995.0 1440 > th dose independent rect. 4 8
397 82.95 radiation 20.0 270 < th dose independent rect. 21 15
398 82.95 temperature 10.0 1440 > th dose independent rect. 12 16
426 82.97 atmosphere 995.0 10 > th dose dependent rect. 11 17
434 82.98 wind 9.0 90 < th dose dependent rect. 11 1
462 83.00 atmosphere 995.0 10 > th dose dependent rect. 24 13
463 83.00 atmosphere 995.0 90 > th dose dependent rect. 23 14
489 83.03 temperature 30.0 90 < th dose dependent rect. 10 7
490 83.03 radiation 40.0 270 < th dose dependent rect. 8 17
491 83.04 wind 1.0 10 < th dose independent rect. 11 1
501 83.04 radiation 40.0 270 < th dose independent rect. 8 17
508 83.04 radiation 40.0 270 < th dose dependent rect. 21 15
552 83.08 temperature 30.0 90 < th dose dependent rect. 10 10
558 83.09 temperature 30.0 270 < th dose dependent rect. 8 9
565 83.10 radiation 40.0 90 < th dose independent rect. 10 17
581 83.11 wind 9.0 10 < th dose dependent rect. 11 2
586 83.12 wind 1.0 90 < th dose independent rect. 11 1
591 83.13 wind 1.0 4320 > th dose independent rect. 19 1
600 83.14 temperature 30.0 90 < th dose independent rect. 23 14
612 83.15 humidity 50.0 10 > th dose independent rect. 13 22
646 83.19 radiation 40.0 10 < th dose independent rect. 11 17
668 83.21 radiation 40.0 10 < th dose independent rect. 11 15
669 83.21 wind 1.0 10 > th dose independent rect. 11 17
748 83.28 atmosphere 1005.0 10 > th dose independent rect. 24 13
759 83.28 temperature 10.0 30 > th dose dependent rect. 13 22
810 83.32 atmosphere 995.0 270 > th dose dependent rect. 8 4
847 83.35 wind 1.0 4320 < th dose independent rect. 19 1
865 83.36 atmosphere 1005.0 10 > th dose independent rect. 8 5
867 83.36 atmosphere 1005.0 30 > th dose independent rect. 6 7
884 83.37 radiation 1.0 1440 < th dose independent rect. 18 11
902 83.38 atmosphere 1005.0 10 > th dose independent rect. 22 15
917 83.39 atmosphere 995.0 14400 > th dose independent rect. 5 7
920 83.39 humidity 50.0 10 > th dose independent rect. 11 17
921 83.39 precipitation 0.1 10 < th dose independent rect. 11 17
927 83.39 precipitation 0.1 10 < th dose dependent rect. 11 17
933 83.40 radiation 1.0 1440 > th dose independent rect. 18 11
941 83.40 atmosphere 995.0 10 > th dose dependent rect. 22 15
952 83.41 atmosphere 995.0 30 > th dose dependent rect. 11 14
959 83.42 wind 9.0 10 < th dose independent rect. 4 7
960 83.42 temperature 10.0 10 > th dose independent rect. 4 7
962 83.42 humidity 50.0 10 > th dose independent rect. 4 7
964 83.42 atmosphere 995.0 10 > th dose independent rect. 4 7
968 83.42 temperature 10.0 10 > th dose independent rect. 11 17
982 83.43 precipitation 0.1 10 < th dose independent rect. 4 7
983 83.43 temperature 10.0 1440 > th dose independent rect. 2 10
986 83.43 atmosphere 995.0 1440 > th dose independent rect. 2 10
987 83.43 temperature 10.0 1440 > th dose independent rect. 12 14
999 83.43 precipitation 0.1 10 < th dose dependent rect. 4 7