Os07g0638400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 1-Cys peroxiredoxin.
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Os07g0638400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 1-Cys peroxiredoxin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.26 | 0.71 | 3.11 | 0.602 | 0.114 | 1.01 | 0.466 | -1.31 | 0.147 | 22.6 | 1.312 | 1483 | -- | -- |
| 226.72 | 0.701 | 3.12 | 0.569 | 0.0513 | 1.41 | 0.331 | -- | 0.129 | 22.4 | 0.17 | 1475 | -- | -- |
| 228.92 | 0.705 | 3.12 | 0.559 | 0.122 | 1.02 | -- | -1.19 | 0.151 | 21.3 | 1.695 | 1480 | -- | -- |
| 226.88 | 0.702 | 3.12 | 0.562 | 0.0961 | 1.36 | -- | -- | 0.149 | 20.8 | 0.17 | 1483 | -- | -- |
| 229.42 | 0.705 | 3.12 | 0.522 | -- | 1.14 | -- | -0.94 | 0.147 | -- | 1.76 | 1513 | -- | -- |
| 244.21 | 0.733 | 3.17 | 0.193 | 0.226 | -- | 0.237 | -- | -0.0245 | 22.6 | -- | -- | -- | -- |
| 244.44 | 0.732 | 3.17 | 0.184 | 0.226 | -- | -- | -- | -0.0251 | 22.6 | -- | -- | -- | -- |
| 227.43 | 0.702 | 3.13 | 0.549 | -- | 1.38 | -- | -- | 0.128 | -- | 0.17 | 1494 | -- | -- |
| 233.88 | 0.712 | 3.13 | -- | 0.132 | 1.18 | -- | -- | 0.0899 | 21.4 | 0.17 | 1495 | -- | -- |
| 247.57 | 0.735 | 3.16 | 0.188 | -- | -- | -- | -- | -0.0241 | -- | -- | -- | -- | -- |
| 245.33 | 0.733 | 3.17 | -- | 0.227 | -- | -- | -- | -0.0456 | 22.6 | -- | -- | -- | -- |
| 234.18 | 0.713 | 3.15 | -- | -- | 1.08 | -- | -- | 0.0454 | -- | 0.17 | 1513 | -- | -- |
| 248.5 | 0.736 | 3.17 | -- | -- | -- | -- | -- | -0.045 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.94 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 222.82 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 4 | 223.13 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 9 | 223.63 | humidity | 60.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 11 | 223.78 | radiation | 30.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 28 | 223.99 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 29 | 223.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 30 | 224.06 | wind | 1.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 79 | 224.52 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 163 | 224.97 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 165 | 225.08 | wind | 1.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 167 | 225.19 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 176 | 225.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 226 | 225.66 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 276 | 225.92 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 279 | 225.96 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 297 | 226.02 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 303 | 226.08 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 311 | 226.32 | wind | 5.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 316 | 226.41 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 317 | 226.41 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 318 | 226.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 320 | 226.41 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 321 | 226.41 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 325 | 226.41 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 327 | 226.41 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 332 | 226.41 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 333 | 226.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 334 | 226.41 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 339 | 226.41 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 340 | 226.42 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 345 | 226.50 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 352 | 226.57 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 355 | 226.57 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 359 | 226.57 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 365 | 226.57 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 366 | 226.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 386 | 226.57 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 390 | 226.63 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 391 | 226.65 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 392 | 226.76 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 393 | 226.77 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 396 | 226.78 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 399 | 226.82 | wind | 1.0 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 411 | 226.99 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 412 | 227.02 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 414 | 227.05 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 419 | 227.16 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 10 | 15 |
| 446 | 227.35 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 457 | 227.46 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 477 | 227.61 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 508 | 227.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 528 | 227.68 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 534 | 227.69 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 537 | 227.70 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 610 | 227.89 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 615 | 227.91 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 616 | 227.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 626 | 227.92 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 649 | 227.95 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 704 | 228.14 | humidity | 90.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 713 | 228.16 | wind | 1.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 717 | 228.17 | wind | 5.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 752 | 228.29 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 756 | 228.31 | radiation | 1.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 763 | 228.33 | wind | 5.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 769 | 228.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 21 |
| 784 | 228.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 795 | 228.40 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 798 | 228.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 826 | 228.45 | wind | 5.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 831 | 228.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 834 | 228.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 880 | 228.51 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 900 | 228.54 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 902 | 228.55 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 928 | 228.61 | radiation | 1.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 929 | 228.61 | wind | 5.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 940 | 228.62 | wind | 1.0 | 90 | < th | dose independent | rect. | 15 | 1 |
| 945 | 228.64 | radiation | 1.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 957 | 228.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 20 |
| 967 | 228.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 1 | 16 |
| 972 | 228.69 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 980 | 228.71 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 983 | 228.71 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |