Os07g0637000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.1.37) (SOS2- like protein kinase PKS13) (SNF1-related kinase 3.16).
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Os07g0637000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.1.37) (SOS2- like protein kinase PKS13) (SNF1-related kinase 3.16).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.55 | 0.578 | 8.67 | 0.34 | 1.75 | 2.88 | -0.362 | -1.36 | 0.603 | 6.99 | 9.662 | 668 | -- | -- |
| 152.27 | 0.575 | 8.67 | 0.4 | 1.75 | 2.87 | -0.924 | -- | 0.622 | 7.31 | 7.743 | 641 | -- | -- |
| 151.37 | 0.573 | 8.66 | 0.395 | 1.67 | 2.94 | -- | -1.4 | 0.628 | 7.15 | 8.058 | 659 | -- | -- |
| 155.46 | 0.581 | 8.67 | 0.359 | 1.69 | 2.94 | -- | -- | 0.603 | 7.45 | 7.381 | 641 | -- | -- |
| 170.63 | 0.608 | 8.7 | 0.563 | -- | 5.04 | -- | -2.28 | 0.705 | -- | 5.649 | 732 | -- | -- |
| 182.8 | 0.634 | 8.67 | 0.312 | 3.96 | -- | -1.02 | -- | 0.443 | 6.05 | -- | -- | -- | -- |
| 185.35 | 0.638 | 8.66 | 0.303 | 3.95 | -- | -- | -- | 0.447 | 6.05 | -- | -- | -- | -- |
| 176.45 | 0.619 | 8.7 | 0.531 | -- | 4.99 | -- | -- | 0.683 | -- | 5.057 | 732 | -- | -- |
| 158.63 | 0.587 | 8.68 | -- | 1.73 | 2.89 | -- | -- | 0.565 | 7.3 | 8.63 | 644 | -- | -- |
| 995.88 | 1.47 | 8.73 | 0.417 | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
| 187.76 | 0.641 | 8.67 | -- | 3.96 | -- | -- | -- | 0.413 | 6.04 | -- | -- | -- | -- |
| 183.19 | 0.63 | 8.71 | -- | -- | 4.99 | -- | -- | 0.624 | -- | 6.244 | 732 | -- | -- |
| 1000.46 | 1.48 | 8.74 | -- | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.22 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 2 | 146.29 | radiation | 20 | 270 | < th | dose dependent | rect. | 10 | 19 |
| 4 | 146.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 9 |
| 14 | 147.67 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 19 |
| 23 | 148.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 41 | 149.76 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 20 |
| 46 | 149.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 51 | 150.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 74 | 151.12 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 8 |
| 87 | 151.53 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 21 |
| 98 | 151.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 101 | 151.85 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 20 |
| 116 | 152.15 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 14 |
| 125 | 152.22 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 138 | 152.45 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 164 | 152.76 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 177 | 152.97 | radiation | 10 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 188 | 153.11 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 6 |
| 190 | 153.11 | radiation | 1 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 199 | 153.21 | radiation | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 209 | 153.31 | radiation | 10 | 720 | < th | dose dependent | sin | 13 | NA |
| 210 | 153.31 | radiation | 10 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 222 | 153.44 | radiation | 10 | 720 | < th | dose independent | sin | 13 | NA |
| 224 | 153.45 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 17 |
| 242 | 153.59 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 255 | 153.70 | radiation | 10 | 720 | < th | dose dependent | no | NA | NA |
| 298 | 154.09 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 304 | 154.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 307 | 154.16 | humidity | 70 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 316 | 154.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 319 | 154.29 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 322 | 154.33 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 21 |
| 334 | 154.43 | radiation | 1 | 720 | > th | dose dependent | sin | 12 | NA |
| 360 | 154.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 368 | 154.64 | humidity | 60 | 720 | > th | dose independent | rect. | 10 | 3 |
| 375 | 154.75 | humidity | 50 | 270 | > th | dose dependent | rect. | 16 | 13 |
| 381 | 154.81 | humidity | 80 | 30 | > th | dose independent | rect. | 3 | 19 |
| 382 | 154.81 | humidity | 70 | 90 | > th | dose independent | rect. | 12 | 19 |
| 388 | 154.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 389 | 154.88 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 8 |
| 407 | 154.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 431 | 155.09 | humidity | 60 | 270 | > th | dose independent | rect. | 10 | 10 |
| 432 | 155.09 | radiation | 10 | 720 | < th | dose independent | rect. | 10 | 11 |
| 506 | 155.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 512 | 155.48 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 524 | 155.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 559 | 155.69 | radiation | 10 | 720 | < th | dose dependent | sin | 0 | NA |
| 591 | 155.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 607 | 155.84 | radiation | 10 | 720 | > th | dose independent | rect. | 13 | 20 |
| 617 | 155.90 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 2 |
| 618 | 155.90 | humidity | 60 | 720 | > th | dose independent | rect. | 1 | 12 |
| 730 | 156.34 | humidity | 70 | 270 | > th | dose independent | rect. | 16 | 13 |
| 749 | 156.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 783 | 156.56 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 784 | 156.56 | radiation | 40 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 813 | 156.65 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 851 | 156.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 859 | 156.77 | humidity | 60 | 270 | > th | dose independent | rect. | 9 | 21 |
| 868 | 156.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 873 | 156.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 882 | 156.84 | humidity | 50 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 919 | 156.96 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 966 | 157.11 | humidity | 90 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 973 | 157.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |