FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0636900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.23 (0.0291) R2 : 0.682
β1 : 1.45 (0.109) R2dD : 0.136 R2D : 0.162
β2 : 0.886 (0.0866) R2dC : 0.0965 R2C : 0.221
β3 : 1.86 (0.123) R2dE : 0.23 R2E : 0.451
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.344 (0.065) R2dN8 : 0.029 R2N8 : 0.0319
σ : 0.54
deviance : 134.48
__
_____
C
peak time of C : 18.3
E
wheather : temperature
threshold : 20.89
memory length : 221
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.65 0.529 4.16 2.01 0.916 2.18 0.0364 4.13 0.506 17.9 10.31 269 -- --
133 0.537 4.23 1.41 0.899 1.88 0.881 -- 0.31 18.4 20.9 218 -- --
126.65 0.524 4.16 2.01 0.917 2.19 -- 4.16 0.507 17.9 10.04 266 -- --
134.48 0.54 4.23 1.45 0.886 1.86 -- -- 0.344 18.3 20.89 221 -- --
156.95 0.583 4.18 1.78 -- 2.36 -- 2.48 0.344 -- 20.38 293 -- --
188.65 0.644 4.17 1.87 1.56 -- 1.43 -- 0.653 17.4 -- -- -- --
193.7 0.652 4.17 1.86 1.57 -- -- -- 0.659 17.4 -- -- -- --
159.31 0.588 4.23 1.34 -- 2.42 -- -- 0.271 -- 22.55 307 -- --
183.09 0.63 4.28 -- 0.754 2.63 -- -- 0.105 18.6 17.1 240 -- --
322.18 0.839 4.15 1.81 -- -- -- -- 0.62 -- -- -- -- --
285.23 0.79 4.22 -- 1.54 -- -- -- 0.451 17.5 -- -- -- --
202.17 0.662 4.28 -- -- 2.81 -- -- 0.0224 -- 19.86 313 -- --
408.68 0.944 4.19 -- -- -- -- -- 0.419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.50 temperature 30 10 < th dose dependent sin 19 NA
8 117.16 temperature 15 10 > th dose dependent sin 18 NA
44 122.30 temperature 20 270 > th dose dependent rect. 9 21
45 122.33 temperature 20 270 > th dose dependent rect. 9 19
49 122.45 temperature 30 90 < th dose dependent rect. 9 14
62 123.29 temperature 20 270 > th dose dependent rect. 9 13
88 124.98 temperature 30 10 < th dose dependent rect. 8 19
116 125.81 temperature 30 270 < th dose dependent rect. 5 22
135 126.49 temperature 20 270 > th dose dependent rect. 23 23
141 126.66 temperature 10 270 > th dose dependent no NA NA
146 126.74 temperature 20 90 > th dose dependent rect. 1 23
180 127.31 temperature 30 90 < th dose dependent rect. 7 22
189 127.46 temperature 20 10 > th dose dependent rect. 1 23
252 128.51 temperature 20 10 > th dose dependent rect. 12 12
260 128.73 temperature 20 270 > th dose dependent rect. 17 23
266 128.86 temperature 20 10 > th dose dependent rect. 23 23
276 129.03 temperature 20 10 > th dose dependent rect. 10 22
284 129.19 temperature 20 10 > th dose dependent rect. 12 16
295 129.39 temperature 25 270 > th dose independent rect. 9 10
317 129.69 temperature 20 10 > th dose dependent rect. 12 19
321 129.76 temperature 20 10 > th dose dependent rect. 3 21
333 129.96 temperature 20 10 > th dose dependent rect. 3 23
334 129.97 temperature 10 10 > th dose dependent no NA NA
351 130.27 temperature 30 270 < th dose dependent no NA NA
375 130.58 temperature 20 10 > th dose dependent rect. 21 23
404 130.89 temperature 30 270 < th dose dependent rect. 24 23
427 131.16 temperature 20 10 > th dose dependent rect. 12 14
435 131.22 temperature 30 270 < th dose dependent rect. 13 23
468 131.75 temperature 20 10 > th dose dependent rect. 3 17
483 131.96 temperature 30 30 < th dose dependent rect. 19 23
487 132.04 temperature 20 10 > th dose dependent rect. 23 21
505 132.16 temperature 30 270 < th dose dependent rect. 21 23
521 132.29 temperature 30 270 < th dose dependent rect. 15 23
522 132.30 temperature 30 10 < th dose dependent rect. 7 23
526 132.32 temperature 30 10 < th dose dependent rect. 15 23
531 132.40 temperature 20 10 > th dose dependent rect. 3 19
540 132.48 temperature 20 10 > th dose dependent rect. 1 19
551 132.59 temperature 30 10 < th dose dependent no NA NA
586 132.84 temperature 30 10 < th dose dependent rect. 11 23
600 132.93 temperature 25 270 < th dose independent sin 21 NA
635 133.34 temperature 30 10 < th dose dependent rect. 17 23
645 133.45 temperature 20 10 > th dose dependent rect. 12 10
673 133.66 temperature 25 270 > th dose independent sin 21 NA
674 133.66 temperature 30 10 < th dose dependent rect. 9 23
694 133.85 temperature 25 1440 < th dose dependent rect. 21 1
786 134.91 temperature 20 10 > th dose dependent rect. 10 12
824 135.30 temperature 25 270 < th dose independent rect. 8 14
830 135.35 temperature 30 10 < th dose dependent rect. 21 23
868 135.67 temperature 30 10 < th dose dependent rect. 4 23
905 135.96 temperature 20 10 > th dose dependent rect. 10 10
926 136.11 temperature 20 10 > th dose dependent rect. 17 23
959 136.39 temperature 20 10 > th dose dependent rect. 12 8
960 136.40 temperature 25 1440 < th dose dependent rect. 17 8