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Os07g0636000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140 associated protein of 57 kDa homolog) (AtNAP57).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0308) R2 : 0.762
β1 : 1.49 (0.113) R2dD : 0.0916 R2D : 0.0976
β2 : 3.07 (0.0863) R2dC : 0.863 R2C : 0.437
β3 : -2.09 (0.118) R2dE : 0.211 R2E : -0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0886 (0.066) R2dN8 : 0.00132 R2N8 : -0.00207
σ : 0.577
deviance : 153.29
__
_____
C
peak time of C : 14.6
E
wheather : temperature
threshold : 39.07
memory length : 113
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.28
open length of G : 15.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.15 0.57 10.4 1.54 2.93 -1.97 1.57 -1.84 0.119 14.7 37.6 89 3.42 15.6
152.21 0.575 10.5 1.5 2.98 -1.93 0.685 -- 0.0899 14.7 38.39 102 3.38 15.6
152.32 0.575 10.4 1.52 2.96 -2.06 -- -0.717 0.111 14.6 37.49 108 3.3 15.6
153.29 0.577 10.4 1.49 3.07 -2.09 -- -- 0.0886 14.6 39.07 113 3.28 15.6
450.82 0.994 10.4 1.53 -- -2.29 -- -3.16 -0.027 -- 29.32 73 0.45 19
195.94 0.656 10.5 1.65 2.62 -- 1.64 -- 0.185 16 -- -- -- --
203.64 0.668 10.4 1.67 2.63 -- -- -- 0.194 16 -- -- -- --
313.8 0.825 10.4 1.3 -- -3.24 -- -- -0.093 -- 29.06 149 0.0154 7.77
208.57 0.673 10.4 -- 3.01 -2.22 -- -- -0.00486 14.5 35.93 108 3.37 15.5
580.35 1.13 10.4 1.56 -- -- -- -- 0.124 -- -- -- -- --
276.82 0.778 10.5 -- 2.6 -- -- -- 0.00835 16 -- -- -- --
339.89 0.859 10.5 -- -- -2.46 -- -- 0.0287 -- 40.39 146 0.00369 7.95
644.48 1.18 10.5 -- -- -- -- -- -0.0491 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.64 temperature 30.0 90 < th dose dependent rect. 3 16
2 153.66 temperature 10.0 90 > th dose dependent rect. 8 19
5 156.09 temperature 10.0 10 > th dose dependent rect. 8 20
12 157.61 temperature 30.0 10 < th dose dependent rect. 4 15
15 158.04 temperature 15.0 90 > th dose dependent rect. 8 7
20 158.56 temperature 10.0 270 > th dose dependent rect. 6 8
30 159.36 atmosphere 1000.0 90 > th dose dependent rect. 3 5
33 159.54 temperature 30.0 270 < th dose dependent rect. 3 2
41 160.25 temperature 30.0 90 < th dose dependent rect. 3 6
48 160.45 temperature 30.0 90 < th dose dependent rect. 3 8
49 160.48 atmosphere 1005.0 90 > th dose independent rect. 3 5
55 160.77 radiation 40.0 90 < th dose independent rect. 3 16
59 160.89 temperature 30.0 90 < th dose independent rect. 3 16
64 161.07 temperature 15.0 10 > th dose dependent rect. 8 7
71 161.40 wind 5.0 270 < th dose independent rect. 3 2
72 161.40 radiation 40.0 270 < th dose dependent rect. 2 15
73 161.59 atmosphere 1005.0 10 > th dose dependent rect. 3 5
83 161.89 atmosphere 1005.0 270 > th dose independent rect. 3 2
86 161.93 atmosphere 1000.0 270 > th dose dependent rect. 3 2
88 161.97 temperature 30.0 10 < th dose dependent rect. 4 5
90 162.05 wind 5.0 90 < th dose independent rect. 3 5
124 162.86 radiation 30.0 270 < th dose dependent rect. 1 10
144 163.13 radiation 30.0 90 < th dose independent rect. 3 8
153 163.23 precipitation 0.1 90 < th dose independent rect. 3 5
154 163.23 precipitation 0.1 90 < th dose dependent rect. 3 5
163 163.32 wind 9.0 90 < th dose independent rect. 8 19
168 163.35 precipitation 0.1 270 < th dose independent rect. 3 2
169 163.35 precipitation 0.1 270 < th dose dependent rect. 3 2
179 163.50 wind 9.0 270 < th dose independent rect. 5 22
180 163.54 temperature 30.0 10 < th dose dependent rect. 4 10
187 163.62 radiation 40.0 270 < th dose dependent sin 7 NA
190 163.64 precipitation 0.1 90 < th dose independent rect. 8 19
191 163.64 precipitation 0.1 90 < th dose dependent rect. 8 19
221 163.98 radiation 40.0 90 < th dose dependent rect. 3 8
225 164.00 wind 1.0 270 > th dose independent rect. 3 2
239 164.11 temperature 10.0 90 > th dose independent rect. 3 5
241 164.11 temperature 30.0 90 < th dose independent rect. 3 5
242 164.11 humidity 50.0 90 > th dose independent rect. 3 5
244 164.11 atmosphere 995.0 90 > th dose independent rect. 3 5
245 164.11 atmosphere 1015.0 90 < th dose independent rect. 3 5
246 164.11 temperature 10.0 90 > th dose independent rect. 8 19
251 164.25 radiation 40.0 90 < th dose independent rect. 3 5
259 164.33 radiation 40.0 10 < th dose independent rect. 4 16
284 164.60 temperature 30.0 90 < th dose dependent sin 3 NA
288 164.63 temperature 10.0 270 > th dose independent rect. 3 2
290 164.63 temperature 30.0 270 < th dose independent rect. 3 2
291 164.63 humidity 50.0 270 > th dose independent rect. 3 2
294 164.63 atmosphere 995.0 270 > th dose independent rect. 3 2
295 164.63 atmosphere 1010.0 270 < th dose independent rect. 3 2
297 164.63 radiation 20.0 270 < th dose independent rect. 3 2
300 164.63 temperature 10.0 270 > th dose independent rect. 5 22
302 164.65 radiation 1.0 270 < th dose dependent rect. 3 2
306 164.68 radiation 40.0 270 < th dose dependent rect. 3 2
320 164.80 temperature 10.0 270 > th dose dependent rect. 21 15
322 164.82 radiation 1.0 270 > th dose dependent sin 8 NA
325 164.84 radiation 1.0 270 < th dose independent rect. 3 2
337 164.97 radiation 40.0 10 < th dose dependent rect. 4 16
349 165.11 radiation 40.0 90 < th dose dependent sin 2 NA
376 165.34 radiation 40.0 90 < th dose dependent rect. 13 19
383 165.44 radiation 10.0 90 > th dose independent rect. 8 7
387 165.46 radiation 1.0 90 > th dose dependent rect. 8 7
393 165.50 wind 1.0 270 > th dose independent rect. 2 4
405 165.60 radiation 30.0 90 < th dose independent rect. 13 19
408 165.62 temperature 30.0 10 < th dose dependent rect. 4 8
411 165.63 radiation 40.0 10 < th dose dependent rect. 4 18
419 165.73 radiation 40.0 270 < th dose independent rect. 10 21
422 165.76 radiation 20.0 270 < th dose independent rect. 1 8
434 165.85 wind 5.0 270 < th dose independent rect. 1 6
436 165.87 temperature 15.0 270 > th dose dependent rect. 9 1
447 165.93 radiation 1.0 270 > th dose dependent rect. 8 2
451 165.96 temperature 30.0 270 < th dose dependent rect. 1 7
453 165.98 radiation 20.0 270 < th dose independent rect. 1 16
455 166.00 wind 9.0 270 < th dose dependent rect. 3 2
474 166.13 radiation 40.0 90 < th dose dependent rect. 13 22
475 166.14 radiation 40.0 10 < th dose independent rect. 4 18
476 166.15 wind 1.0 270 > th dose independent rect. 1 6
495 166.26 wind 9.0 90 < th dose dependent rect. 3 5
499 166.30 wind 9.0 10 < th dose independent rect. 8 20
523 166.41 temperature 10.0 270 > th dose dependent rect. 19 18
530 166.47 wind 5.0 10 < th dose independent rect. 4 4
548 166.54 temperature 10.0 90 > th dose dependent sin 3 NA
556 166.58 radiation 1.0 90 > th dose dependent rect. 8 10
588 166.72 precipitation 0.1 90 < th dose independent rect. 8 7
590 166.72 precipitation 0.1 90 < th dose dependent rect. 8 7
593 166.75 temperature 15.0 90 > th dose independent rect. 8 7
596 166.76 radiation 10.0 270 > th dose independent rect. 17 20
597 166.76 precipitation 0.1 270 < th dose independent rect. 5 22
600 166.76 precipitation 0.1 270 < th dose dependent rect. 5 22
604 166.78 temperature 10.0 10 > th dose dependent sin 2 NA
608 166.80 atmosphere 995.0 90 > th dose independent rect. 15 17
620 166.84 wind 9.0 90 < th dose independent rect. 8 7
622 166.84 radiation 40.0 10 < th dose dependent rect. 12 21
630 166.88 precipitation 0.1 10 < th dose independent rect. 4 4
631 166.88 precipitation 0.1 10 < th dose dependent rect. 4 4
639 166.92 radiation 1.0 10 > th dose dependent rect. 8 8
644 166.93 radiation 1.0 10 > th dose dependent rect. 8 11
691 167.01 radiation 40.0 90 < th dose dependent rect. 15 17
695 167.03 temperature 10.0 10 > th dose independent rect. 4 4
697 167.03 temperature 30.0 10 < th dose independent rect. 4 4
698 167.03 humidity 50.0 10 > th dose independent rect. 4 4
700 167.03 atmosphere 995.0 10 > th dose independent rect. 4 4
701 167.03 atmosphere 1015.0 10 < th dose independent rect. 4 4
702 167.03 temperature 10.0 10 > th dose independent rect. 8 20
717 167.08 radiation 1.0 270 > th dose dependent rect. 7 4
725 167.10 radiation 40.0 10 < th dose dependent sin 1 NA
728 167.11 atmosphere 1015.0 90 < th dose independent rect. 8 7
729 167.11 temperature 10.0 90 > th dose independent rect. 15 17
735 167.13 radiation 10.0 270 > th dose independent rect. 6 7
748 167.13 temperature 20.0 10 > th dose dependent sin 2 NA
758 167.16 wind 7.0 270 < th dose independent rect. 6 8
761 167.17 radiation 10.0 270 < th dose independent rect. 2 12
768 167.21 radiation 10.0 270 > th dose independent sin 6 NA
783 167.21 temperature 25.0 90 > th dose dependent sin 5 NA
798 167.25 radiation 1.0 90 > th dose dependent sin 3 NA
800 167.25 temperature 20.0 90 > th dose dependent rect. 19 20
805 167.28 wind 1.0 90 > th dose independent rect. 8 7
810 167.29 radiation 10.0 10 > th dose independent rect. 8 7
827 167.32 radiation 30.0 90 < th dose independent rect. 15 17
845 167.36 radiation 40.0 270 < th dose independent rect. 13 17
898 167.51 humidity 50.0 90 > th dose independent rect. 8 7
927 167.62 radiation 40.0 10 < th dose independent rect. 4 4
929 167.63 atmosphere 995.0 90 > th dose independent rect. 8 7
972 167.74 humidity 90.0 90 < th dose independent rect. 8 7