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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0635200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.72 (0.0459) R2 : 0.774
β1 : 5.69 (0.17) R2dD : 0.594 R2D : 0.465
β2 : 2.33 (0.119) R2dC : 0.191 R2C : 0.188
β3 : -0.838 (0.125) R2dE : 0.0237 R2E : -0.0335
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.977 (0.0996) R2dN8 : 0.0669 R2N8 : 0.00534
σ : 0.855
deviance : 336.78
__
_____
C
peak time of C : 6.26
E
wheather : temperature
threshold : 32.8
memory length : 1040
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.67 0.857 5.89 4.18 2.35 0.306 0.884 -9.92 0.977 6.28 31.85 1093 -- --
335.68 0.853 5.74 5.67 2.29 -0.848 0.586 -- 0.934 6.27 32.75 1031 -- --
334.36 0.852 5.89 4.19 2.35 0.331 -- -10.2 0.976 6.27 32.16 1056 -- --
336.78 0.855 5.72 5.69 2.33 -0.838 -- -- 0.977 6.26 32.8 1040 -- --
524.74 1.07 5.93 4.68 -- -1.96 -- -9.1 0.96 -- 25.2 509 -- --
366.11 0.897 5.68 5.49 2.32 -- 0.837 -- 1.12 6.5 -- -- -- --
367.85 0.898 5.68 5.5 2.32 -- -- -- 1.12 6.49 -- -- -- --
459.98 0.999 5.69 5.86 -- -2.58 -- -- 1.33 -- 24.9 521 -- --
1162.61 1.6 5.82 -- 2.42 1.26 -- -- 0.513 6.32 33.8 978 -- --
648.97 1.19 5.73 5.56 -- -- -- -- 1.16 -- -- -- -- --
1165.85 1.6 5.82 -- 2.4 -- -- -- 0.503 6.36 -- -- -- --
900.28 1.4 6.12 -- -- 3.82 -- -- -0.596 -- -11.41 47520 -- --
1464.64 1.79 5.87 -- -- -- -- -- 0.548 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 320.49 temperature 30 720 < th dose independent rect. 17 14
2 322.52 humidity 70 720 > th dose independent rect. 19 10
3 325.44 humidity 70 720 > th dose independent rect. 18 13
5 325.65 humidity 70 720 > th dose independent rect. 19 2
7 326.77 radiation 20 1440 > th dose dependent rect. 16 1
22 327.22 wind 1 720 > th dose independent rect. 4 1
24 327.74 radiation 20 1440 > th dose independent rect. 16 15
25 327.77 radiation 20 1440 > th dose independent rect. 16 1
40 329.55 humidity 80 1440 < th dose dependent rect. 16 6
41 329.59 radiation 20 1440 < th dose independent rect. 16 1
43 329.69 temperature 30 720 > th dose independent rect. 18 1
58 329.82 temperature 30 720 > th dose dependent rect. 18 15
59 329.89 temperature 25 4320 > th dose independent rect. 4 2
60 329.90 temperature 30 720 > th dose dependent rect. 18 1
75 329.95 radiation 20 1440 < th dose independent rect. 16 7
77 329.96 radiation 20 1440 < th dose independent rect. 16 3
82 330.12 radiation 20 1440 < th dose independent rect. 16 5
90 330.44 humidity 80 720 > th dose independent rect. 4 18
92 330.53 temperature 25 4320 < th dose independent rect. 4 2
94 330.63 temperature 25 4320 > th dose dependent rect. 4 2
104 330.90 temperature 25 1440 > th dose dependent rect. 6 1
106 330.93 humidity 80 1440 < th dose dependent rect. 16 1
130 331.28 temperature 20 30 > th dose dependent rect. 16 12
143 331.66 humidity 70 720 > th dose independent sin 12 NA
146 331.80 temperature 15 720 > th dose dependent rect. 16 3
150 331.88 humidity 70 720 < th dose independent rect. 18 2
162 331.98 humidity 60 1440 < th dose independent rect. 16 1
164 332.02 temperature 20 30 > th dose dependent rect. 16 14
166 332.10 wind 7 720 < th dose independent rect. 19 12
167 332.10 humidity 80 1440 < th dose dependent sin 14 NA
183 332.16 humidity 60 1440 > th dose independent rect. 16 1
199 332.21 humidity 70 720 > th dose independent rect. 19 8
200 332.22 humidity 80 720 > th dose independent rect. 9 13
206 332.40 humidity 80 720 < th dose dependent rect. 18 1
213 332.54 temperature 30 1440 > th dose dependent rect. 15 4
239 332.57 humidity 80 720 < th dose independent rect. 8 14
240 332.61 humidity 60 1440 < th dose independent rect. 14 4
241 332.61 humidity 60 1440 > th dose independent rect. 14 5
246 332.66 humidity 50 720 > th dose dependent rect. 19 2
249 332.69 temperature 30 720 < th dose independent rect. 17 6
254 332.74 temperature 30 1440 > th dose dependent sin 13 NA
260 332.81 humidity 60 1440 > th dose independent rect. 14 18
261 332.82 humidity 60 1440 > th dose independent rect. 14 11
267 332.84 humidity 60 1440 > th dose independent rect. 14 9
270 332.85 humidity 60 1440 > th dose independent rect. 14 7
380 333.30 humidity 50 1440 > th dose dependent rect. 16 4
392 333.42 humidity 70 14400 < th dose independent rect. 19 13
395 333.44 humidity 60 1440 > th dose independent sin 14 NA
426 333.59 humidity 70 14400 < th dose dependent rect. 17 14
429 333.61 humidity 70 14400 < th dose dependent rect. 17 5
439 333.62 humidity 70 720 < th dose independent sin 12 NA
448 333.65 temperature 30 720 < th dose independent rect. 16 17
453 333.69 humidity 50 1440 > th dose dependent rect. 16 1
523 333.83 humidity 60 1440 < th dose independent sin 14 NA
619 334.33 humidity 80 10 > th dose independent rect. 6 21
653 334.58 temperature 10 720 > th dose dependent rect. 13 6
704 334.78 temperature 30 1440 < th dose independent rect. 17 3
788 334.93 humidity 70 720 > th dose dependent rect. 4 18
816 334.99 humidity 70 14400 > th dose independent rect. 19 13
952 335.48 humidity 60 14400 < th dose dependent rect. 16 17
994 335.58 temperature 25 270 < th dose independent rect. 12 10
999 335.61 humidity 70 720 > th dose independent rect. 10 21