Os07g0631300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0631300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.66 | 0.476 | 10 | -3.12 | 2.23 | 1.12 | 0.619 | -6.95 | -0.612 | 4.78 | 25.3 | 1671 | -- | -- |
| 111.05 | 0.491 | 9.84 | -1.67 | 2.14 | 0.799 | 0.702 | -- | -0.354 | 4.78 | 15.36 | 7350 | -- | -- |
| 103.22 | 0.473 | 10 | -3.09 | 2.23 | 1.16 | -- | -7.3 | -0.579 | 4.73 | 25.84 | 1713 | -- | -- |
| 112.09 | 0.493 | 9.84 | -1.69 | 2.14 | 0.876 | -- | -- | -0.374 | 4.72 | 10.4 | 7446 | -- | -- |
| 307.69 | 0.821 | 9.8 | -1.2 | -- | -1.38 | -- | -2.1 | 0.00498 | -- | 24.1 | 4218 | -- | -- |
| 123.28 | 0.521 | 9.79 | -1.23 | 2.14 | -- | 0.719 | -- | -0.134 | 4.73 | -- | -- | -- | -- |
| 124.59 | 0.523 | 9.79 | -1.24 | 2.15 | -- | -- | -- | -0.138 | 4.69 | -- | -- | -- | -- |
| 310.19 | 0.824 | 9.77 | -0.93 | -- | -1.53 | -- | -- | 0.0849 | -- | 24.1 | 4218 | -- | -- |
| 153.97 | 0.578 | 9.77 | -- | 2.15 | -0.496 | -- | -- | -0.0121 | 4.78 | 35.15 | 30448 | -- | -- |
| 369.48 | 0.898 | 9.81 | -1.15 | -- | -- | -- | -- | -0.0817 | -- | -- | -- | -- | -- |
| 164.86 | 0.601 | 9.76 | -- | 2.13 | -- | -- | -- | -0.000147 | 4.71 | -- | -- | -- | -- |
| 332.52 | 0.852 | 9.74 | -- | -- | -1.67 | -- | -- | 0.201 | -- | 24.1 | 4218 | -- | -- |
| 404.64 | 0.939 | 9.78 | -- | -- | -- | -- | -- | 0.0464 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.12 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 2 | 96.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 3 | 96.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 6 | 96.96 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 21 | 97.95 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 25 | 98.03 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 28 | 98.09 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 29 | 98.09 | radiation | 30 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 37 | 98.43 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 45 | 98.66 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 48 | 98.69 | radiation | 20 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 60 | 99.00 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 92 | 99.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 108 | 99.82 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 133 | 100.19 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 141 | 100.23 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 143 | 100.24 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 146 | 100.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 147 | 100.31 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 160 | 100.44 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 161 | 100.44 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 164 | 100.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 172 | 100.54 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 174 | 100.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 175 | 100.55 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 188 | 100.62 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 190 | 100.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 195 | 100.67 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 219 | 100.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 227 | 100.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 231 | 100.76 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 241 | 100.80 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 257 | 100.82 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 263 | 100.82 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 22 |
| 264 | 100.83 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 270 | 100.85 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 274 | 100.86 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 13 |
| 286 | 100.90 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 317 | 100.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 318 | 100.95 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 319 | 100.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 334 | 100.98 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 364 | 101.01 | radiation | 40 | 43200 | > th | dose independent | sin | 4 | NA |
| 366 | 101.01 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 368 | 101.01 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 394 | 101.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 411 | 101.04 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 459 | 101.09 | humidity | 60 | 43200 | < th | dose dependent | sin | 0 | NA |
| 468 | 101.10 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 10 |
| 518 | 101.16 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 523 | 101.17 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 684 | 101.20 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 685 | 101.20 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 737 | 101.28 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 765 | 101.30 | radiation | 20 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 794 | 101.33 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 811 | 101.35 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 812 | 101.35 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 847 | 101.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 907 | 101.42 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 934 | 101.43 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 937 | 101.43 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 980 | 101.50 | radiation | 40 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 981 | 101.50 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 982 | 101.50 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 14 |