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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0631200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.83 (0.0479) R2 : 0.907
β1 : 0.695 (0.176) R2dD : 0.00375 R2D : 0.000336
β2 : -- (--) R2dC : -- R2C : --
β3 : -6.04 (0.0913) R2dE : 0.907 R2E : 0.903
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0907 (0.102) R2dN8 : 0.000155 R2N8 : -0.000342
σ : 0.897
deviance : 370.68
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 8.179
memory length : 125
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 14.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.84 0.883 5.86 0.759 1.12 -5.4 0.0165 -0.828 0.0156 15.5 8.849 97 17.1 14.6
354.62 0.877 5.86 0.758 1.19 -5.3 0.791 -- 0.0208 15.1 8.989 97 17.1 14.4
351.78 0.874 5.86 0.752 1.12 -5.41 -- -0.784 0.00514 15.6 8.349 99 17 14.5
355.71 0.878 5.86 0.763 1.12 -5.43 -- -- 0.0119 15.6 8.337 99 17 14.5
389.44 0.919 5.92 0.76 -- -5.67 -- -1.12 -0.0165 -- 9.622 118 17.1 14.4
644.65 1.19 5.74 0.631 7.34 -- 1.03 -- 0.138 13.2 -- -- -- --
649.03 1.19 5.74 0.667 7.34 -- -- -- 0.144 13.2 -- -- -- --
370.68 0.897 5.83 0.695 -- -6.04 -- -- 0.0907 -- 8.179 125 16.9 14.6
371.08 0.897 5.87 -- 1.1 -5.41 -- -- -0.0662 15.6 8.034 102 17 14.5
3983.59 2.95 5.85 0.384 -- -- -- -- -0.00474 -- -- -- -- --
660.75 1.2 5.76 -- 7.33 -- -- -- 0.0695 13.2 -- -- -- --
384.65 0.913 5.85 -- -- -6.08 -- -- -0.000475 -- 8.021 125 16.9 14.5
3987.48 2.95 5.86 -- -- -- -- -- -0.0474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 363.70 radiation 10.0 90 < th dose dependent rect. 17 15
4 372.49 radiation 1.0 90 > th dose independent rect. 6 12
5 372.81 radiation 10.0 90 < th dose dependent rect. 17 20
6 376.26 radiation 10.0 90 < th dose dependent rect. 17 18
54 411.47 radiation 10.0 90 < th dose dependent rect. 13 19
57 413.80 radiation 10.0 90 < th dose dependent rect. 11 22
58 413.90 radiation 10.0 90 < th dose dependent rect. 9 23
69 418.66 radiation 1.0 90 < th dose independent rect. 3 18
71 419.24 radiation 10.0 90 < th dose dependent rect. 7 23
77 420.58 humidity 50.0 90 > th dose independent rect. 17 13
78 420.75 radiation 10.0 90 < th dose dependent no NA NA
91 426.69 radiation 1.0 90 < th dose dependent rect. 4 17
97 428.82 precipitation 0.1 90 < th dose independent rect. 6 12
98 428.82 precipitation 0.1 90 < th dose dependent rect. 6 12
119 434.44 radiation 20.0 270 < th dose independent rect. 16 13
122 436.25 radiation 1.0 90 < th dose dependent sin 0 NA
124 436.53 radiation 10.0 90 < th dose dependent rect. 23 23
127 437.11 wind 9.0 90 < th dose independent rect. 6 12
135 439.68 radiation 1.0 90 < th dose independent sin 0 NA
136 440.06 radiation 40.0 720 < th dose dependent rect. 17 3
138 440.18 radiation 1.0 90 > th dose independent sin 0 NA
140 440.74 temperature 10.0 720 > th dose independent rect. 17 3
141 440.74 atmosphere 1015.0 720 < th dose independent rect. 17 3
142 440.74 radiation 30.0 720 < th dose independent rect. 17 3
144 440.74 temperature 10.0 720 > th dose independent rect. 20 21
148 441.01 atmosphere 995.0 90 > th dose independent rect. 17 13
154 442.23 temperature 10.0 90 > th dose independent rect. 6 12
155 442.23 temperature 10.0 90 > th dose independent rect. 18 12
157 442.23 atmosphere 1015.0 90 < th dose independent rect. 6 12
162 442.45 precipitation 0.1 720 < th dose independent rect. 5 3
163 442.45 precipitation 0.1 720 < th dose dependent rect. 5 3
165 442.66 wind 9.0 720 < th dose independent rect. 5 3
166 442.66 temperature 10.0 720 > th dose independent rect. 5 3
167 442.66 temperature 30.0 720 < th dose independent rect. 5 3
168 442.66 humidity 50.0 720 > th dose independent rect. 5 3
170 442.66 atmosphere 995.0 720 > th dose independent rect. 5 3
171 442.66 atmosphere 1015.0 720 < th dose independent rect. 5 3
172 442.66 temperature 10.0 720 > th dose independent rect. 8 21
173 442.78 wind 9.0 90 < th dose independent rect. 18 12
174 443.23 temperature 20.0 90 > th dose independent rect. 6 12
192 443.87 radiation 10.0 90 < th dose dependent rect. 1 23
214 445.28 radiation 40.0 720 < th dose independent rect. 5 3
218 445.86 wind 9.0 720 < th dose independent rect. 17 3
219 445.90 humidity 60.0 10 > th dose independent rect. 18 12
221 446.13 wind 1.0 720 > th dose independent rect. 17 3
226 448.20 radiation 1.0 90 < th dose independent rect. 16 19
227 448.30 temperature 10.0 30 > th dose dependent rect. 6 12
241 448.90 temperature 10.0 720 > th dose independent rect. 18 1
242 448.90 humidity 50.0 720 > th dose independent rect. 18 1
243 448.90 atmosphere 1015.0 720 < th dose independent rect. 18 1
244 448.90 radiation 20.0 720 < th dose independent rect. 18 1
247 448.90 temperature 10.0 720 > th dose independent rect. 19 23
249 449.20 humidity 50.0 720 > th dose independent rect. 17 3
260 449.97 wind 9.0 720 < th dose independent rect. 18 1
262 450.42 radiation 40.0 720 < th dose dependent rect. 18 1
265 450.79 precipitation 0.1 720 < th dose independent rect. 6 1
266 450.79 precipitation 0.1 720 < th dose dependent rect. 6 1
271 451.04 wind 7.0 720 < th dose independent rect. 6 1
273 451.04 temperature 10.0 720 > th dose independent rect. 6 1
274 451.04 temperature 30.0 720 < th dose independent rect. 6 1
275 451.04 humidity 50.0 720 > th dose independent rect. 6 1
277 451.04 atmosphere 995.0 720 > th dose independent rect. 6 1
278 451.04 atmosphere 1015.0 720 < th dose independent rect. 6 1
279 451.04 radiation 40.0 720 < th dose independent rect. 6 1
280 451.04 temperature 10.0 720 > th dose independent rect. 7 23
294 452.94 radiation 1.0 90 < th dose independent rect. 23 23
302 453.68 precipitation 0.1 90 < th dose independent rect. 18 12
304 453.68 precipitation 0.1 90 < th dose dependent rect. 18 12
345 457.49 temperature 30.0 90 < th dose independent rect. 17 13
364 458.14 precipitation 0.1 720 < th dose independent rect. 18 1
365 458.14 precipitation 0.1 720 < th dose dependent rect. 18 1
370 458.61 temperature 30.0 10 < th dose independent rect. 18 12
377 459.27 humidity 90.0 30 < th dose independent rect. 6 12
379 459.52 wind 9.0 720 < th dose independent rect. 20 21
412 461.53 wind 1.0 720 > th dose independent rect. 18 1
413 461.78 atmosphere 995.0 90 > th dose independent rect. 6 11
422 462.25 humidity 50.0 720 > th dose independent rect. 17 12
424 462.31 radiation 1.0 90 > th dose independent no NA NA
472 462.68 radiation 1.0 90 < th dose independent no NA NA
473 462.69 radiation 1.0 90 < th dose independent rect. 9 23
509 464.58 temperature 10.0 720 > th dose independent rect. 18 10
510 464.58 humidity 50.0 720 > th dose independent rect. 18 10
511 464.58 radiation 20.0 720 < th dose independent rect. 18 10
514 464.58 temperature 10.0 720 > th dose independent rect. 4 14
515 464.58 atmosphere 1015.0 720 < th dose independent rect. 4 14
558 465.76 wind 9.0 720 < th dose independent rect. 20 5
561 466.10 humidity 50.0 720 > th dose dependent rect. 6 1
563 466.25 radiation 40.0 720 < th dose dependent rect. 18 10
566 466.30 temperature 10.0 1440 > th dose independent rect. 7 12
569 466.30 temperature 10.0 1440 > th dose independent rect. 19 12
572 466.30 temperature 30.0 1440 < th dose independent rect. 19 12
576 466.30 humidity 50.0 1440 > th dose independent rect. 19 12
578 466.30 atmosphere 995.0 1440 > th dose independent rect. 19 12
579 466.30 radiation 40.0 1440 < th dose independent rect. 19 12
583 466.36 temperature 10.0 720 > th dose independent rect. 20 5
584 466.36 temperature 30.0 720 < th dose independent rect. 20 5
585 466.36 humidity 50.0 720 > th dose independent rect. 20 5
588 466.36 atmosphere 995.0 720 > th dose independent rect. 20 5
589 466.36 radiation 1.0 720 < th dose independent rect. 20 5
594 466.36 temperature 10.0 720 > th dose independent rect. 1 19
595 466.36 radiation 10.0 720 < th dose dependent rect. 20 5
612 466.80 radiation 1.0 90 < th dose independent rect. 1 23
614 466.89 wind 9.0 720 < th dose independent rect. 18 10
619 467.01 temperature 10.0 720 > th dose independent rect. 8 5
620 467.01 atmosphere 995.0 720 > th dose independent rect. 8 5
621 467.01 atmosphere 1015.0 720 < th dose independent rect. 8 5
622 467.01 temperature 10.0 720 > th dose independent rect. 13 19
628 467.37 radiation 1.0 720 < th dose dependent rect. 1 4
629 467.42 precipitation 0.1 720 < th dose independent rect. 8 5
630 467.42 precipitation 0.1 720 < th dose dependent rect. 8 5
644 467.99 radiation 1.0 90 < th dose independent rect. 7 23
660 468.59 precipitation 0.1 720 < th dose independent rect. 17 3
661 468.59 precipitation 0.1 720 < th dose dependent rect. 17 3
667 469.10 temperature 10.0 720 > th dose independent rect. 13 4
668 469.10 atmosphere 1015.0 720 < th dose independent rect. 13 4
669 469.10 temperature 10.0 720 > th dose independent rect. 17 20
692 469.76 precipitation 0.1 720 < th dose independent rect. 20 21
693 469.76 precipitation 0.1 720 < th dose dependent rect. 20 21
715 470.44 radiation 20.0 720 < th dose dependent rect. 1 4
719 470.48 temperature 10.0 720 > th dose independent rect. 1 4
720 470.48 temperature 30.0 720 < th dose independent rect. 1 4
721 470.48 humidity 50.0 720 > th dose independent rect. 1 4
724 470.48 atmosphere 995.0 720 > th dose independent rect. 1 4
725 470.48 radiation 20.0 720 < th dose independent rect. 1 4
728 470.48 temperature 10.0 720 > th dose independent rect. 5 20
729 470.49 wind 9.0 720 < th dose dependent rect. 6 1
730 470.51 wind 9.0 720 < th dose independent rect. 1 4
736 470.69 radiation 1.0 720 < th dose independent rect. 1 4
743 471.24 wind 9.0 720 < th dose independent rect. 21 11
750 471.80 temperature 10.0 720 > th dose independent rect. 21 11
751 471.80 temperature 30.0 720 < th dose independent rect. 21 11
752 471.80 humidity 50.0 720 > th dose independent rect. 21 11
754 471.80 atmosphere 995.0 720 > th dose independent rect. 21 11
757 472.02 wind 9.0 720 < th dose independent rect. 20 13
766 472.64 temperature 10.0 720 > th dose independent rect. 9 11
767 472.64 atmosphere 1015.0 720 < th dose independent rect. 9 11
802 473.92 wind 9.0 720 < th dose independent rect. 8 5
806 474.28 radiation 40.0 720 < th dose independent rect. 21 11
815 475.10 atmosphere 995.0 720 > th dose independent rect. 18 2
837 476.27 wind 9.0 720 < th dose independent rect. 13 4
841 476.54 precipitation 0.1 720 < th dose independent rect. 4 14
842 476.54 precipitation 0.1 720 < th dose dependent rect. 4 14
855 477.20 precipitation 0.1 720 < th dose independent rect. 13 4
856 477.20 precipitation 0.1 720 < th dose dependent rect. 13 4
858 477.58 radiation 1.0 10 < th dose dependent rect. 16 6
861 477.64 wind 9.0 270 < th dose independent rect. 13 12
878 479.07 radiation 1.0 90 < th dose independent rect. 16 5
890 479.83 atmosphere 1015.0 720 < th dose independent rect. 8 13
899 480.05 atmosphere 995.0 720 > th dose independent rect. 18 10
900 480.07 radiation 1.0 90 < th dose independent rect. 7 14
904 480.24 temperature 10.0 270 > th dose independent rect. 1 12
905 480.24 temperature 10.0 270 > th dose independent rect. 13 12
906 480.24 atmosphere 995.0 270 > th dose independent rect. 1 12
907 480.24 atmosphere 1015.0 270 < th dose independent rect. 1 12
932 481.13 wind 9.0 720 < th dose independent rect. 8 21
941 481.46 wind 1.0 720 > th dose independent rect. 8 5
953 481.83 wind 9.0 720 < th dose independent rect. 13 19
966 482.14 atmosphere 1015.0 90 < th dose independent rect. 18 12
975 482.35 humidity 50.0 720 > th dose dependent rect. 5 3
988 482.60 temperature 10.0 720 > th dose dependent rect. 18 1
991 482.84 wind 9.0 720 < th dose independent rect. 17 20
992 482.99 temperature 10.0 90 > th dose dependent rect. 18 12
996 483.12 wind 1.0 10 > th dose independent rect. 6 12