FiT-DB / Search/ Help/ Sample detail

Os07g0628900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to KI domain interacting kinase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0352) R2 : 0.936
β1 : 1.91 (0.136) R2dD : 0.0336 R2D : 0.00468
β2 : 0.541 (0.315) R2dC : 0.00555 R2C : 0.122
β3 : -7.62 (0.376) R2dE : 0.771 R2E : 0.881
β4 : -14.1 (1.46) R2dD*C : 0.213 R2D*C : -0.176
β5 : -14.8 (1.77) R2dD*E : 0.16 R2D*E : -0.205
γ1 : 0.845 (0.075) R2dN8 : 0.025 R2N8 : 0.00383
σ : 0.649
deviance : 190.72
__
_____
C
peak time of C : 15.4
E
wheather : radiation
threshold : 0.3897
memory length : 696
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.72 0.649 12.1 1.91 0.541 -7.62 -14.1 -14.8 0.845 15.4 0.3897 696 9.6 --
223.35 0.696 12.1 1.58 0.925 -8.56 2.35 -- 0.737 4.35 1.093 659 8.52 --
252.29 0.745 12.2 1.77 6.95 0.285 -- 2.67 0.856 16 0.3897 696 9.6 --
230.05 0.706 12.2 1.56 0.496 -8.19 -- -- 0.708 4.72 0.8656 659 8.7 --
278.63 0.777 12.2 1.72 -- -7.29 -- 1.97 0.704 -- 275.4 951 9.99 --
274.91 0.777 12.2 1.85 6.94 -- -1.88 -- 0.878 16.1 -- -- -- --
284.76 0.79 12.2 1.82 6.93 -- -- -- 0.867 16.1 -- -- -- --
230.19 0.707 12.2 1.56 -- -7.71 -- -- 0.71 -- 0.77 659 8.84 --
287.36 0.79 12.2 -- 0.671 -8.47 -- -- 0.588 4.68 0.004235 657 8.95 --
2891.1 2.51 12.2 1.54 -- -- -- -- 0.683 -- -- -- -- --
372.4 0.903 12.3 -- 6.9 -- -- -- 0.664 16.1 -- -- -- --
286.7 0.789 12.2 -- -- -7.94 -- -- 0.55 -- 0.005822 666 9.26 --
2953.95 2.54 12.2 -- -- -- -- -- 0.511 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.62 radiation 1.0 720 < th dose dependent rect. 16 13
4 194.45 radiation 1.0 720 < th dose independent rect. 16 13
12 198.32 radiation 1.0 720 > th dose independent rect. 13 5
18 199.38 radiation 1.0 720 > th dose independent rect. 13 16
32 199.98 radiation 1.0 720 < th dose dependent rect. 17 4
47 201.13 radiation 1.0 720 < th dose dependent sin 16 NA
50 201.55 radiation 1.0 720 < th dose independent rect. 16 5
52 201.85 radiation 1.0 720 < th dose dependent rect. 3 16
60 202.46 radiation 1.0 720 > th dose independent sin 14 NA
78 203.66 radiation 1.0 720 < th dose dependent rect. 1 22
87 204.12 radiation 1.0 720 < th dose dependent rect. 1 20
97 204.78 radiation 1.0 720 < th dose independent sin 15 NA
101 205.02 radiation 20.0 720 < th dose dependent rect. 16 14
108 205.22 temperature 15.0 270 > th dose dependent rect. 17 8
121 205.84 radiation 1.0 720 < th dose dependent rect. 23 23
131 206.24 radiation 1.0 720 > th dose independent rect. 13 20
144 206.69 temperature 15.0 270 > th dose dependent rect. 21 4
147 206.83 radiation 1.0 720 > th dose independent rect. 11 23
148 206.89 precipitation 0.1 270 < th dose independent rect. 14 11
149 206.89 precipitation 0.1 270 < th dose dependent rect. 14 11
153 207.01 radiation 1.0 720 > th dose independent rect. 13 22
167 207.51 temperature 15.0 270 > th dose dependent rect. 19 7
175 207.72 radiation 30.0 43200 < th dose independent rect. 17 11
193 207.99 radiation 1.0 720 < th dose independent rect. 1 20
197 208.10 radiation 1.0 720 < th dose dependent sin 1 NA
199 208.14 radiation 1.0 720 < th dose independent rect. 1 22
203 208.24 wind 7.0 720 < th dose independent rect. 22 10
205 208.29 radiation 1.0 720 < th dose independent rect. 23 23
216 208.48 temperature 30.0 90 < th dose independent rect. 17 13
217 208.57 humidity 50.0 270 > th dose independent rect. 15 14
231 209.00 humidity 50.0 90 > th dose dependent rect. 17 13
233 209.07 temperature 10.0 270 > th dose dependent rect. 6 19
236 209.11 radiation 1.0 720 > th dose independent rect. 6 12
242 209.32 radiation 1.0 720 > th dose independent rect. 6 23
259 209.46 radiation 1.0 720 < th dose dependent no NA NA
273 209.56 humidity 70.0 90 > th dose independent rect. 17 13
277 209.64 temperature 15.0 90 > th dose independent rect. 15 15
292 209.92 wind 1.0 720 > th dose dependent rect. 18 1
300 210.05 radiation 1.0 720 < th dose independent rect. 2 17
306 210.26 radiation 1.0 720 > th dose independent rect. 4 14
322 210.39 radiation 1.0 720 > th dose independent no NA NA
387 210.62 temperature 30.0 270 < th dose independent rect. 15 14
391 210.67 humidity 50.0 90 > th dose dependent rect. 15 15
422 211.28 radiation 20.0 270 < th dose independent rect. 15 14
438 211.56 radiation 1.0 720 < th dose independent no NA NA
451 211.84 temperature 15.0 270 > th dose dependent rect. 23 1
458 212.02 wind 7.0 720 < th dose independent rect. 20 14
463 212.03 temperature 15.0 90 > th dose independent rect. 17 13
488 212.73 wind 9.0 270 < th dose independent rect. 14 11
498 213.02 wind 9.0 270 < th dose independent rect. 1 13
502 213.07 temperature 10.0 270 > th dose independent rect. 14 11
503 213.07 temperature 10.0 270 > th dose independent rect. 1 13
504 213.07 atmosphere 995.0 270 > th dose independent rect. 1 13
505 213.07 atmosphere 1015.0 270 < th dose independent rect. 1 13
508 213.10 temperature 30.0 90 < th dose dependent rect. 15 15
529 213.61 radiation 20.0 720 < th dose dependent rect. 16 6
530 213.62 temperature 15.0 720 > th dose independent rect. 18 11
536 213.75 temperature 30.0 90 < th dose dependent rect. 17 13
570 214.30 temperature 15.0 720 > th dose independent rect. 10 10
577 214.47 precipitation 0.1 270 < th dose independent rect. 1 13
578 214.47 precipitation 0.1 270 < th dose dependent rect. 1 13
602 214.78 radiation 40.0 270 < th dose independent rect. 14 11
612 214.95 temperature 15.0 720 > th dose independent rect. 18 2
613 214.96 humidity 50.0 10 > th dose dependent rect. 16 15
618 215.21 precipitation 0.1 720 < th dose independent rect. 6 19
620 215.21 precipitation 0.1 720 < th dose dependent rect. 6 19
643 215.68 temperature 15.0 720 > th dose independent rect. 17 4
646 215.71 precipitation 0.1 720 < th dose independent rect. 20 14
648 215.71 precipitation 0.1 720 < th dose dependent rect. 20 14
654 215.76 wind 5.0 90 < th dose independent rect. 17 10
655 215.76 temperature 15.0 10 > th dose independent rect. 15 15
681 216.31 temperature 10.0 720 > th dose dependent rect. 15 2
683 216.33 humidity 50.0 90 > th dose independent rect. 6 9
698 216.49 wind 9.0 720 < th dose independent rect. 13 5
699 216.49 humidity 70.0 10 > th dose independent rect. 16 15
701 216.52 temperature 15.0 270 > th dose independent rect. 11 18
702 216.54 atmosphere 995.0 90 > th dose independent rect. 6 9
704 216.57 wind 9.0 90 < th dose independent rect. 15 15
716 216.67 temperature 10.0 90 > th dose independent rect. 6 9
717 216.67 atmosphere 1015.0 90 < th dose independent rect. 6 9
736 216.82 precipitation 0.1 90 < th dose independent rect. 6 9
737 216.82 precipitation 0.1 90 < th dose dependent rect. 6 9
759 217.09 precipitation 0.1 720 < th dose independent rect. 13 5
760 217.09 precipitation 0.1 720 < th dose dependent rect. 13 5
769 217.18 radiation 30.0 720 < th dose dependent rect. 1 5
772 217.19 temperature 15.0 720 > th dose independent rect. 17 22
782 217.27 radiation 10.0 720 < th dose independent rect. 1 5
798 217.32 temperature 10.0 720 > th dose dependent rect. 14 4
799 217.33 temperature 10.0 720 > th dose independent rect. 1 5
800 217.33 temperature 30.0 720 < th dose independent rect. 1 5
801 217.33 humidity 50.0 720 > th dose independent rect. 1 5
804 217.33 atmosphere 995.0 720 > th dose independent rect. 1 5
808 217.33 temperature 10.0 720 > th dose independent rect. 6 19
816 217.43 temperature 15.0 720 > th dose independent rect. 18 19
823 217.50 wind 9.0 720 < th dose independent rect. 1 5
833 217.58 temperature 10.0 270 > th dose independent rect. 5 11
834 217.58 atmosphere 1015.0 270 < th dose independent rect. 5 11
839 217.60 wind 1.0 270 > th dose independent rect. 14 11
840 217.60 humidity 60.0 720 > th dose independent rect. 18 11
842 217.62 temperature 10.0 720 > th dose independent rect. 13 5
843 217.62 atmosphere 1015.0 720 < th dose independent rect. 13 5
850 217.66 wind 9.0 90 < th dose independent rect. 6 9
855 217.68 atmosphere 995.0 90 > th dose independent rect. 15 15
860 217.71 wind 9.0 270 < th dose independent rect. 16 13
868 217.78 precipitation 0.1 270 < th dose independent rect. 5 11
872 217.78 precipitation 0.1 270 < th dose dependent rect. 5 11
890 218.00 wind 9.0 720 < th dose independent rect. 6 19
892 218.01 precipitation 0.1 720 < th dose independent rect. 22 10
893 218.01 precipitation 0.1 720 < th dose dependent rect. 22 10
934 218.30 radiation 20.0 720 < th dose independent rect. 18 11
937 218.30 temperature 10.0 720 > th dose independent rect. 5 13
938 218.30 atmosphere 1015.0 720 < th dose independent rect. 5 13
946 218.39 humidity 90.0 720 < th dose independent rect. 15 3
959 218.51 atmosphere 1015.0 720 < th dose independent rect. 1 5
963 218.53 precipitation 0.1 720 < th dose independent rect. 5 13
964 218.53 precipitation 0.1 720 < th dose dependent rect. 5 13
965 218.55 radiation 30.0 1440 < th dose independent rect. 4 3