Os07g0628700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor protein kinase.
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Os07g0628700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 187.73 | 0.644 | 11.6 | 1.47 | 3.98 | 2.93 | -2.26 | 2.54 | 0.721 | 14.4 | 0.5127 | 694 | 7.02 | -- |
| 195.21 | 0.651 | 11.6 | 1.31 | 3.96 | 2.99 | -2.37 | -- | 0.688 | 14.4 | 0.6 | 684 | 7.04 | -- |
| 202.17 | 0.662 | 11.6 | 1.43 | 4.45 | 3.26 | -- | 3.22 | 0.729 | 14 | 0.5113 | 702 | 7.62 | -- |
| 215.47 | 0.684 | 11.6 | 1.19 | 4.07 | 2.97 | -- | -- | 0.674 | 14.3 | 0.5997 | 689 | 7.17 | -- |
| 1016.55 | 1.48 | 11.6 | 2.13 | -- | 3.15 | -- | 3.63 | 0.617 | -- | 38.97 | 376 | 6.73 | -- |
| 275.87 | 0.779 | 11.6 | 1.5 | 4.53 | -- | -1.88 | -- | 0.882 | 15.8 | -- | -- | -- | -- |
| 286.17 | 0.792 | 11.6 | 1.47 | 4.52 | -- | -- | -- | 0.871 | 15.9 | -- | -- | -- | -- |
| 473.3 | 1.01 | 11.9 | 1.04 | -- | 5.13 | -- | -- | 0.044 | -- | 1.07 | 645 | 5.67 | -- |
| 250.48 | 0.737 | 11.7 | -- | 4.08 | 3.28 | -- | -- | 0.508 | 14.2 | 0.51 | 698 | 7.15 | -- |
| 1409.69 | 1.75 | 11.6 | 1.28 | -- | -- | -- | -- | 0.751 | -- | -- | -- | -- | -- |
| 343.18 | 0.867 | 11.7 | -- | 4.49 | -- | -- | -- | 0.707 | 15.9 | -- | -- | -- | -- |
| 408.96 | 0.942 | 11.7 | -- | -- | 6.16 | -- | -- | 0.267 | -- | 0.4797 | 704 | 5.61 | -- |
| 1453.19 | 1.78 | 11.6 | -- | -- | -- | -- | -- | 0.608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.63 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 62 | 196.18 | temperature | 20 | 14400 | < th | dose dependent | sin | 9 | NA |
| 124 | 197.03 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 162 | 197.46 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 164 | 197.47 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 178 | 197.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 195 | 197.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 202 | 197.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 275 | 198.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 291 | 198.75 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 295 | 198.80 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 16 |
| 309 | 198.90 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 347 | 199.28 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 352 | 199.34 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 357 | 199.38 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 375 | 199.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 410 | 199.78 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 423 | 199.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 432 | 199.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 16 |
| 439 | 199.89 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 444 | 199.91 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 455 | 199.95 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 467 | 200.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 469 | 200.01 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 474 | 200.02 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 496 | 200.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 501 | 200.14 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 583 | 200.34 | radiation | 1 | 43200 | < th | dose dependent | sin | 22 | NA |
| 622 | 200.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 11 |
| 624 | 200.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 686 | 200.52 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 15 |
| 840 | 200.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 846 | 200.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 11 |
| 852 | 200.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 900 | 200.81 | temperature | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 957 | 200.86 | temperature | 20 | 43200 | > th | dose independent | sin | 9 | NA |