Os07g0627400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0627400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.33 | 0.222 | 11.7 | 1.15 | 0.213 | -0.2 | 0.51 | -1.43 | -0.0324 | 13.6 | 20.2 | 1428 | -- | -- |
| 24.17 | 0.231 | 11.8 | 0.854 | 0.133 | -0.165 | 0.412 | -- | -0.167 | 13.2 | 24.2 | 1683 | -- | -- |
| 23.17 | 0.224 | 11.7 | 1.17 | 0.215 | -0.198 | -- | -1.42 | -0.0239 | 13.7 | 20.39 | 1595 | -- | -- |
| 23.95 | 0.229 | 11.8 | 0.886 | 0.0823 | -0.201 | -- | -- | -0.177 | 12.4 | 25.3 | 1574 | -- | -- |
| 25.91 | 0.237 | 11.7 | 1.17 | -- | -0.183 | -- | -1.35 | -0.0345 | -- | 20.6 | 1629 | -- | -- |
| 25.99 | 0.239 | 11.8 | 0.916 | 0.212 | -- | 0.444 | -- | -0.0826 | 13.7 | -- | -- | -- | -- |
| 26.76 | 0.242 | 11.8 | 0.93 | 0.214 | -- | -- | -- | -0.0798 | 14 | -- | -- | -- | -- |
| 24.3 | 0.231 | 11.8 | 0.878 | -- | -0.23 | -- | -- | -0.191 | -- | 25.3 | 1574 | -- | -- |
| 28.21 | 0.247 | 11.9 | -- | 0.225 | -0.677 | -- | -- | -0.433 | 14 | 23.9 | 47520 | -- | -- |
| 29.51 | 0.254 | 11.8 | 0.922 | -- | -- | -- | -- | -0.0848 | -- | -- | -- | -- | -- |
| 49.57 | 0.329 | 11.8 | -- | 0.197 | -- | -- | -- | -0.183 | 13.9 | -- | -- | -- | -- |
| 30.12 | 0.256 | 11.9 | -- | -- | -0.684 | -- | -- | -0.426 | -- | 22.07 | 47520 | -- | -- |
| 51.91 | 0.336 | 11.8 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.99 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 2 | 22.05 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 9 | 22.18 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 11 | 22.19 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 12 | 22.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 18 | 22.21 | radiation | 20 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 27 | 22.22 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 30 | 22.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 41 | 22.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 46 | 22.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 53 | 22.27 | radiation | 10 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 60 | 22.29 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 80 | 22.29 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 81 | 22.29 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 92 | 22.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 105 | 22.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 123 | 22.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 138 | 22.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 166 | 22.35 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 167 | 22.35 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 168 | 22.35 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 208 | 22.37 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 225 | 22.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 229 | 22.37 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 247 | 22.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 248 | 22.39 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 249 | 22.39 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 255 | 22.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 298 | 22.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 324 | 22.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 329 | 22.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 22 |
| 337 | 22.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 363 | 22.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 365 | 22.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 18 |
| 385 | 22.43 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 23 |
| 386 | 22.43 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 389 | 22.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 396 | 22.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 435 | 22.44 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 520 | 22.46 | radiation | 40 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 531 | 22.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 539 | 22.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 581 | 22.47 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 586 | 22.47 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 590 | 22.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 645 | 22.48 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 648 | 22.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 650 | 22.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 678 | 22.48 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 683 | 22.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 706 | 22.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 741 | 22.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 764 | 22.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 799 | 22.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 816 | 22.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 819 | 22.51 | radiation | 30 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 874 | 22.52 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 22 |
| 876 | 22.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 878 | 22.52 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 921 | 22.52 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 935 | 22.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 943 | 22.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 949 | 22.53 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 962 | 22.53 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 973 | 22.53 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 17 |
| 984 | 22.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |