Os07g0626500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0626500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38 | 0.29 | 8.81 | 0.93 | 0.429 | 0.682 | 0.303 | 1.13 | 0.163 | 19.8 | 10.32 | 2742 | -- | -- |
| 37.9 | 0.287 | 8.83 | 0.732 | 0.328 | 0.603 | 0.233 | -- | 0.149 | 20.1 | 24.35 | 2161 | -- | -- |
| 38.23 | 0.288 | 8.81 | 0.93 | 0.421 | 0.685 | -- | 1.15 | 0.163 | 19.7 | 10.55 | 2635 | -- | -- |
| 38.06 | 0.287 | 8.83 | 0.721 | 0.337 | 0.601 | -- | -- | 0.149 | 19.8 | 24.34 | 2236 | -- | -- |
| 41.79 | 0.301 | 8.82 | 0.889 | -- | 1.04 | -- | 1.35 | 0.129 | -- | 14.22 | 696 | -- | -- |
| 48.53 | 0.327 | 8.82 | 0.919 | 0.428 | -- | 0.329 | -- | 0.226 | 20.4 | -- | -- | -- | -- |
| 48.87 | 0.327 | 8.82 | 0.91 | 0.428 | -- | -- | -- | 0.226 | 20.3 | -- | -- | -- | -- |
| 39.52 | 0.293 | 8.83 | 0.72 | -- | 0.826 | -- | -- | 0.141 | -- | 24.39 | 766 | -- | -- |
| 41.38 | 0.3 | 8.91 | -- | 0.429 | 0.869 | -- | -- | -0.166 | 20.4 | 18.23 | 35237 | -- | -- |
| 59.05 | 0.359 | 8.81 | 0.907 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 70.67 | 0.393 | 8.84 | -- | 0.424 | -- | -- | -- | 0.125 | 20.5 | -- | -- | -- | -- |
| 50.69 | 0.332 | 8.9 | -- | -- | 0.842 | -- | -- | -0.148 | -- | 16.79 | 35341 | -- | -- |
| 80.75 | 0.419 | 8.83 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 7 | 37.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 11 | 37.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 14 | 37.38 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 21 | 37.43 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 28 | 37.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 78 | 37.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 15 |
| 107 | 37.80 | temperature | 30 | 270 | < th | dose dependent | sin | 17 | NA |
| 117 | 37.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 123 | 37.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 125 | 37.87 | temperature | 15 | 270 | > th | dose dependent | sin | 16 | NA |
| 129 | 37.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 143 | 37.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 152 | 37.94 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 176 | 37.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 191 | 38.02 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 237 | 38.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 241 | 38.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 267 | 38.15 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 298 | 38.17 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 320 | 38.19 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 321 | 38.19 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 322 | 38.19 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 323 | 38.19 | temperature | 10 | 1440 | > th | dose dependent | sin | 3 | NA |
| 331 | 38.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 335 | 38.21 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 397 | 38.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 18 |
| 399 | 38.26 | wind | 7 | 43200 | > th | dose independent | sin | 6 | NA |
| 420 | 38.27 | wind | 7 | 43200 | < th | dose independent | sin | 6 | NA |
| 656 | 38.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 679 | 38.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 22 | 17 |
| 715 | 38.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 723 | 38.38 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 755 | 38.39 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 756 | 38.39 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 757 | 38.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 804 | 38.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 806 | 38.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 810 | 38.41 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 844 | 38.42 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 871 | 38.43 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 893 | 38.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 950 | 38.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 23 |