Os07g0626100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L7/L12.
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Os07g0626100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L7/L12.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.87 | 0.335 | 11.7 | 0.501 | 1.55 | 0.612 | 0.137 | -0.404 | 0.167 | 17 | 19.5 | 2501 | -- | -- |
| 51.12 | 0.333 | 11.6 | 0.523 | 1.53 | 0.713 | 0.191 | -- | 0.164 | 16.9 | 19.1 | 2495 | -- | -- |
| 50.91 | 0.332 | 11.7 | 0.499 | 1.55 | 0.613 | -- | -0.417 | 0.167 | 17 | 19.5 | 2504 | -- | -- |
| 51.07 | 0.333 | 11.6 | 0.548 | 1.55 | 0.717 | -- | -- | 0.184 | 17 | 18.9 | 2488 | -- | -- |
| 174.4 | 0.615 | 11.6 | 0.449 | -- | 0.597 | -- | -0.347 | 0.133 | -- | 19.3 | 3363 | -- | -- |
| 59.83 | 0.363 | 11.6 | 0.904 | 1.52 | -- | 0.249 | -- | 0.33 | 17 | -- | -- | -- | -- |
| 59.98 | 0.363 | 11.6 | 0.904 | 1.52 | -- | -- | -- | 0.332 | 17 | -- | -- | -- | -- |
| 174.55 | 0.615 | 11.6 | 0.523 | -- | 0.682 | -- | -- | 0.188 | -- | 19 | 3351 | -- | -- |
| 54.64 | 0.344 | 11.7 | -- | 1.53 | 1.09 | -- | -- | 0.0584 | 17 | 18.71 | 6858 | -- | -- |
| 181.62 | 0.63 | 11.6 | 0.849 | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
| 81.52 | 0.422 | 11.6 | -- | 1.51 | -- | -- | -- | 0.231 | 17.1 | -- | -- | -- | -- |
| 176.34 | 0.618 | 11.6 | -- | -- | 1 | -- | -- | 0.027 | -- | 19 | 6339 | -- | -- |
| 200.64 | 0.661 | 11.6 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 20 | 43.82 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 37 | 44.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 58 | 44.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 76 | 45.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 79 | 45.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 80 | 45.12 | temperature | 30 | 30 | < th | dose dependent | sin | 0 | NA |
| 117 | 45.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 123 | 45.68 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 127 | 45.75 | temperature | 10 | 30 | > th | dose dependent | sin | 1 | NA |
| 220 | 46.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 298 | 47.14 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 328 | 47.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 419 | 47.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 434 | 47.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 445 | 48.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 449 | 48.04 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 9 |
| 450 | 48.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 492 | 48.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 519 | 48.27 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 554 | 48.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 800 | 49.18 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 14 |
| 843 | 49.31 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 940 | 49.60 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 971 | 49.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |