Os07g0623200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heavy metal transport/detoxification protein domain containing protein.
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Os07g0623200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heavy metal transport/detoxification protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.28 | 0.471 | 10.2 | 0.164 | 2.18 | -1.59 | -0.369 | 1.88 | -0.154 | 20.1 | 24 | 357 | 7.18 | 3.47 |
| 108.72 | 0.486 | 10.2 | 0.354 | 2.23 | -1.76 | -1.34 | -- | -0.113 | 20.2 | 23.7 | 380 | 6.82 | 4.35 |
| 100.39 | 0.467 | 10.2 | 0.149 | 2.18 | -1.59 | -- | 2.05 | -0.159 | 20.1 | 23.88 | 365 | 7.13 | 3.53 |
| 114.81 | 0.499 | 10.2 | 0.422 | 2.19 | -1.84 | -- | -- | -0.104 | 20.1 | 23.6 | 383 | 6.78 | 4.32 |
| 206.34 | 0.669 | 10.1 | 1.16 | -- | -1.92 | -- | 1.43 | 0.253 | -- | 25.6 | 566 | 2.08 | 7.17 |
| 172.58 | 0.616 | 10.1 | 0.691 | 2.59 | -- | -2.05 | -- | 0.186 | 20.9 | -- | -- | -- | -- |
| 186.78 | 0.64 | 10.1 | 0.763 | 2.6 | -- | -- | -- | 0.189 | 20.9 | -- | -- | -- | -- |
| 173.2 | 0.613 | 10.1 | 0.74 | -- | -2.32 | -- | -- | 0.223 | -- | 25.39 | 602 | 1.73 | 5.77 |
| 119.22 | 0.509 | 10.2 | -- | 2.18 | -1.95 | -- | -- | -0.156 | 20 | 23.61 | 386 | 6.87 | 4.28 |
| 572.98 | 1.12 | 10.1 | 0.762 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 202.12 | 0.665 | 10.2 | -- | 2.6 | -- | -- | -- | 0.104 | 20.9 | -- | -- | -- | -- |
| 179.96 | 0.625 | 10.1 | -- | -- | -2.82 | -- | -- | 0.207 | -- | 25.32 | 545 | 1.6 | 7.27 |
| 588.3 | 1.13 | 10.1 | -- | -- | -- | -- | -- | 0.0852 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.81 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 22 | 120.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 23 | 120.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 31 | 120.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 41 | 121.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 75 | 122.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 77 | 122.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 83 | 123.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 94 | 123.57 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 190 | 126.70 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 15 |
| 206 | 127.16 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 7 |
| 251 | 128.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 284 | 128.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 311 | 129.50 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 342 | 130.18 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 377 | 130.94 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 436 | 131.70 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 442 | 131.79 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 509 | 132.86 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 511 | 132.87 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 572 | 133.47 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 617 | 133.80 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 706 | 134.79 | radiation | 40 | 720 | > th | dose dependent | sin | 10 | NA |
| 744 | 135.22 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 899 | 136.64 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 995 | 137.34 | humidity | 70 | 30 | < th | dose independent | rect. | 11 | 1 |