Os07g0622400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0622400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.72 | 0.756 | 5.14 | -1.99 | 0.662 | 2.39 | 1.28 | -3.69 | -0.454 | 3.68 | 20.19 | 1398 | -- | -- |
| 265.65 | 0.759 | 5.01 | -1.43 | 0.8 | 2.91 | 1.32 | -- | -0.19 | 3.86 | 9.755 | 4812 | -- | -- |
| 263.29 | 0.756 | 5.13 | -1.98 | 0.742 | 2.36 | -- | -3.53 | -0.445 | 3.92 | 20.36 | 1465 | -- | -- |
| 269.38 | 0.764 | 5.02 | -1.51 | 0.815 | 3.02 | -- | -- | -0.234 | 4.36 | 5.54 | 5005 | -- | -- |
| 285.67 | 0.787 | 5.14 | -2.06 | -- | 2.5 | -- | -3.43 | -0.435 | -- | 20.49 | 2655 | -- | -- |
| 419.46 | 0.96 | 4.89 | -0.0801 | 0.838 | -- | 1.27 | -- | 0.367 | 3.49 | -- | -- | -- | -- |
| 424.33 | 0.965 | 4.89 | -0.102 | 0.85 | -- | -- | -- | 0.359 | 3.72 | -- | -- | -- | -- |
| 292.3 | 0.796 | 5.03 | -1.28 | -- | 2.94 | -- | -- | -0.224 | -- | 14.5 | 2620 | -- | -- |
| 299.44 | 0.806 | 4.97 | -- | 0.904 | 2.5 | -- | -- | -0.0132 | 4.66 | 5.499 | 1985 | -- | -- |
| 464.35 | 1.01 | 4.89 | -0.0668 | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
| 424.61 | 0.964 | 4.89 | -- | 0.848 | -- | -- | -- | 0.371 | 3.72 | -- | -- | -- | -- |
| 319.4 | 0.832 | 4.98 | -- | -- | 1.99 | -- | -- | 0.0162 | -- | 20.9 | 2616 | -- | -- |
| 464.46 | 1.01 | 4.89 | -- | -- | -- | -- | -- | 0.389 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 2 | 254.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 3 | 254.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 13 | 255.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 10 |
| 26 | 255.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 255.85 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 35 | 256.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 41 | 256.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 99 | 258.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 101 | 258.36 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 109 | 258.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 111 | 258.55 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 10 |
| 115 | 258.64 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 125 | 258.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 129 | 258.87 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 138 | 258.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 140 | 258.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 151 | 259.09 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 159 | 259.14 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 167 | 259.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 169 | 259.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 175 | 259.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 219 | 259.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 222 | 259.59 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 245 | 259.73 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 306 | 260.09 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 331 | 260.20 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 366 | 260.32 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 437 | 260.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 481 | 260.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 609 | 261.17 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 621 | 261.22 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 652 | 261.31 | wind | 5 | 43200 | > th | dose independent | sin | 22 | NA |
| 749 | 261.66 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 762 | 261.73 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 803 | 261.87 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 933 | 262.38 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 967 | 262.48 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 1 |