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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0621800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase superfamily, zinc-containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0887) R2 : 0.045
β1 : -3.52 (0.334) R2dD : 0.312 R2D : 0.058
β2 : 0.945 (0.395) R2dC : -0.144 R2C : -0.0625
β3 : -2.81 (0.4) R2dE : -0.348 R2E : -0.291
β4 : 2.95 (1.95) R2dD*C : 0.0963 R2D*C : -0.0874
β5 : 6.23 (2) R2dD*E : -0.072 R2D*E : -0.275
γ1 : -2.72 (0.188) R2dN8 : 0.397 R2N8 : 0.135
σ : 0.974
deviance : 429.32
__
_____
C
peak time of C : 8.67
E
wheather : radiation
threshold : 2
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 12
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
429.32 0.974 5.42 -3.52 0.945 -2.81 2.95 6.23 -2.72 8.67 2 7 12 --
646.57 1.19 5.36 -3.56 1.29 0.363 2.69 -- -2.16 8.64 2 7 12 --
617.57 1.17 5.31 -3.4 2.59 -1.78 -- 2.6 -2.09 9.75 54.98 47 19.6 --
640.84 1.19 5.29 -3.33 3.28 -2.45 -- -- -2.09 9.54 56.25 61 20 --
617.66 1.16 5.37 -3.18 -- -2.29 -- 2.5 -2.15 -- 49.93 4104 19.5 --
649 1.19 5.37 -3.57 0.998 -- 2.72 -- -2.17 8.51 -- -- -- --
672.19 1.21 5.37 -3.48 0.987 -- -- -- -2.16 8.88 -- -- -- --
608.19 1.15 5.37 -3.17 -- -2.55 -- -- -2.15 -- 49.94 3905 17.3 --
927.09 1.43 5.18 -- 4.26 -3.48 -- -- -1.69 9.67 56.25 61 20 --
727.81 1.26 5.4 -3.48 -- -- -- -- -2.16 -- -- -- -- --
991.66 1.47 5.28 -- 0.983 -- -- -- -1.78 9.14 -- -- -- --
662.3 1.2 5.44 -- -- -3.69 -- -- -1.96 -- 49.37 29745 18.2 --
1047.52 1.51 5.31 -- -- -- -- -- -1.77 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 424.81 radiation 10 1440 < th dose independent rect. 11 19
5 429.32 radiation 10 1440 < th dose independent sin 18 NA
6 429.52 radiation 20 1440 < th dose independent rect. 10 3
13 430.24 radiation 10 1440 < th dose independent rect. 10 10
19 430.44 radiation 10 1440 < th dose independent rect. 10 15
74 432.75 radiation 30 1440 < th dose dependent rect. 10 3
152 440.47 radiation 30 1440 < th dose dependent rect. 11 1
196 446.72 radiation 1 1440 > th dose dependent rect. 11 2
227 449.14 radiation 20 1440 < th dose independent rect. 2 18
228 449.14 radiation 20 1440 < th dose independent rect. 23 21
232 449.18 radiation 20 1440 < th dose independent rect. 2 16
256 449.26 radiation 20 1440 < th dose independent rect. 2 23
257 449.26 radiation 20 1440 < th dose independent rect. 19 23
264 449.28 radiation 20 1440 < th dose independent no NA NA
270 449.28 radiation 20 1440 < th dose independent rect. 5 23
324 449.68 radiation 20 1440 < th dose independent rect. 16 23
511 458.68 radiation 20 1440 < th dose dependent rect. 9 21
532 459.50 radiation 20 1440 > th dose independent rect. 10 3
536 459.82 radiation 30 1440 < th dose dependent rect. 10 10
549 460.02 radiation 30 1440 < th dose dependent rect. 10 15
603 461.07 radiation 20 1440 < th dose dependent sin 23 NA
716 465.63 radiation 1 1440 > th dose dependent rect. 10 20
724 466.44 radiation 1 1440 > th dose dependent rect. 10 9
756 467.43 radiation 20 1440 < th dose dependent rect. 18 23
764 467.70 radiation 20 1440 < th dose dependent rect. 2 15
765 467.70 radiation 20 1440 < th dose dependent rect. 23 18
821 468.79 radiation 20 1440 < th dose dependent rect. 2 18
822 468.79 radiation 20 1440 < th dose dependent rect. 24 20
850 468.94 radiation 20 1440 < th dose dependent rect. 2 23
852 468.96 radiation 20 1440 < th dose dependent no NA NA