Os07g0621400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0621400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312.11 | 0.83 | 4.4 | 0.347 | 0.429 | -0.681 | -1.07 | -1.25 | -0.193 | 12.6 | 24.3 | 89 | -- | -- |
| 320.03 | 0.833 | 4.42 | 0.164 | 0.372 | -0.744 | -0.685 | -- | -0.268 | 12 | 24.5 | 122 | -- | -- |
| 315.94 | 0.828 | 4.41 | 0.188 | 0.427 | -0.688 | -- | -0.858 | -0.228 | 12.5 | 24.31 | 100 | -- | -- |
| 319.22 | 0.832 | 4.44 | -0.087 | 0.433 | -0.754 | -- | -- | -0.323 | 12.3 | 24.4 | 119 | -- | -- |
| 326.35 | 0.841 | 4.45 | 0.117 | -- | -0.832 | -- | -0.799 | -0.325 | -- | 24.39 | 89 | -- | -- |
| 351.12 | 0.878 | 4.36 | 0.172 | 0.776 | -- | -0.318 | -- | 0.0762 | 13.9 | -- | -- | -- | -- |
| 351.5 | 0.878 | 4.36 | 0.162 | 0.776 | -- | -- | -- | 0.0746 | 14 | -- | -- | -- | -- |
| 329.41 | 0.845 | 4.47 | -0.13 | -- | -0.867 | -- | -- | -0.403 | -- | 24.34 | 94 | -- | -- |
| 319.35 | 0.832 | 4.44 | -- | 0.45 | -0.728 | -- | -- | -0.311 | 12.5 | 24.39 | 119 | -- | -- |
| 387.83 | 0.92 | 4.36 | 0.13 | -- | -- | -- | -- | 0.0565 | -- | -- | -- | -- | -- |
| 352.2 | 0.878 | 4.36 | -- | 0.773 | -- | -- | -- | 0.0565 | 14 | -- | -- | -- | -- |
| 329.7 | 0.846 | 4.47 | -- | -- | -0.853 | -- | -- | -0.391 | -- | 24.34 | 87 | -- | -- |
| 388.27 | 0.92 | 4.37 | -- | -- | -- | -- | -- | 0.042 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 305.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 306.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 6 | 307.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 7 | 308.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 8 | 308.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 9 | 308.65 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 11 | 309.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 12 | 309.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 15 | 309.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 16 | 309.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 23 | 309.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 27 | 309.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 28 | 309.74 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 31 | 309.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 32 | 309.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 58 | 310.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 72 | 310.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 81 | 311.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 91 | 311.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 97 | 311.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 117 | 311.83 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 123 | 311.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 147 | 312.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 171 | 312.74 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 177 | 312.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 184 | 312.90 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 192 | 312.98 | temperature | 25 | 10 | < th | dose dependent | sin | 23 | NA |
| 224 | 313.52 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 18 |
| 225 | 313.54 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 259 | 313.78 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 21 |
| 265 | 313.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 285 | 314.08 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 17 |
| 322 | 314.53 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 23 |
| 343 | 314.73 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 384 | 315.09 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 409 | 315.31 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 419 | 315.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 442 | 315.62 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 457 | 315.72 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 461 | 315.78 | humidity | 90 | 90 | < th | dose independent | rect. | 3 | 1 |
| 470 | 315.89 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 490 | 316.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 513 | 316.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 519 | 316.26 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 534 | 316.38 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 536 | 316.39 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 3 |
| 539 | 316.40 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 585 | 316.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 589 | 316.72 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 596 | 316.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 17 |
| 641 | 316.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 662 | 317.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 674 | 317.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 697 | 317.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 716 | 317.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 722 | 317.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 726 | 317.36 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 740 | 317.45 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 747 | 317.49 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 21 |
| 749 | 317.50 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 764 | 317.55 | wind | 9 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 791 | 317.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 806 | 317.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 818 | 317.74 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 943 | 318.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 15 |