Os07g0619800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CDPK-related protein kinase (EC 2.7.1.-) (PK421).
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Os07g0619800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CDPK-related protein kinase (EC 2.7.1.-) (PK421).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.3 | 0.429 | 11.5 | -0.85 | 3.03 | 1.35 | -1.98 | -1.84 | -0.0976 | 17.3 | 25.1 | 5447 | -- | -- |
| 82.45 | 0.423 | 11.5 | -0.508 | 3.03 | 1.28 | -2 | -- | -0.234 | 17.3 | 22.9 | 8226 | -- | -- |
| 92.96 | 0.449 | 11.5 | -0.82 | 3.02 | 1.35 | -- | -1.68 | -0.116 | 17.3 | 25 | 5462 | -- | -- |
| 91.21 | 0.445 | 11.5 | -0.513 | 3.02 | 1.29 | -- | -- | -0.247 | 17.4 | 23.04 | 8223 | -- | -- |
| 468.33 | 1.01 | 11.4 | -0.189 | -- | 1.24 | -- | -0.208 | 0.0226 | -- | 27.12 | 4935 | -- | -- |
| 134.31 | 0.543 | 11.4 | 0.242 | 2.99 | -- | -1.95 | -- | 0.316 | 17.4 | -- | -- | -- | -- |
| 143.7 | 0.561 | 11.4 | 0.246 | 2.98 | -- | -- | -- | 0.307 | 17.4 | -- | -- | -- | -- |
| 468.43 | 1.01 | 11.4 | -0.149 | -- | 1.24 | -- | -- | 0.0339 | -- | 27.17 | 4939 | -- | -- |
| 95.96 | 0.456 | 11.5 | -- | 3.04 | 1.12 | -- | -- | -0.152 | 17.4 | 23.5 | 8238 | -- | -- |
| 604.54 | 1.15 | 11.3 | 0.146 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 145.29 | 0.564 | 11.4 | -- | 2.97 | -- | -- | -- | 0.279 | 17.4 | -- | -- | -- | -- |
| 310.22 | 0.82 | 11.2 | -- | -- | 1.95 | -- | -- | -0.235 | -- | 26.1 | 367 | -- | -- |
| 605.1 | 1.15 | 11.3 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 3 | 80.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 5 | 80.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 11 | 80.86 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 19 | 81.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 25 | 81.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 31 | 81.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 33 | 81.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 50 | 81.41 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 52 | 81.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 60 | 81.53 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 67 | 81.59 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 75 | 81.65 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 96 | 81.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 99 | 81.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 127 | 82.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 153 | 82.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 157 | 82.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 196 | 82.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 22 |
| 198 | 82.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 215 | 82.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 217 | 82.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 223 | 82.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 245 | 82.41 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 252 | 82.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 277 | 82.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 297 | 82.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 314 | 82.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 343 | 82.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 359 | 82.66 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 394 | 82.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 444 | 82.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 21 |
| 467 | 82.90 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 495 | 82.97 | temperature | 15 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 509 | 83.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 510 | 83.01 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 519 | 83.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 533 | 83.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 548 | 83.09 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 560 | 83.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 571 | 83.13 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 577 | 83.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 16 |
| 598 | 83.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 10 |
| 605 | 83.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 610 | 83.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 614 | 83.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 633 | 83.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 641 | 83.22 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 644 | 83.22 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 648 | 83.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 654 | 83.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 655 | 83.23 | radiation | 1 | 43200 | < th | dose dependent | sin | 17 | NA |
| 667 | 83.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 672 | 83.25 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 673 | 83.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 681 | 83.25 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 692 | 83.26 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 767 | 83.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 816 | 83.36 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 929 | 83.49 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 936 | 83.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 6 |
| 961 | 83.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 964 | 83.53 | humidity | 90 | 43200 | > th | dose dependent | sin | 4 | NA |
| 971 | 83.54 | temperature | 20 | 14400 | > th | dose dependent | sin | 13 | NA |
| 974 | 83.55 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 993 | 83.57 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 996 | 83.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 1000 | 83.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 4 |