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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0618400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0343) R2 : 0.232
β1 : -1.06 (0.129) R2dD : 0.126 R2D : 0.0221
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.12 (0.111) R2dE : 0.189 R2E : 0.0878
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.321 (0.0743) R2dN8 : 0.0438 R2N8 : -0.0134
σ : 0.639
deviance : 188.21
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.5
memory length : 1122
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.31 0.627 3.66 -1.56 0.467 1.11 0.313 -2.64 -0.247 2.87 27.66 1245 -- --
178.89 0.623 3.61 -1.03 0.472 0.895 0.41 -- -0.227 3.57 26.13 1105 -- --
178.46 0.622 3.65 -1.55 0.462 1.13 -- -2.41 -0.276 3.07 27.3 1187 -- --
178.03 0.621 3.62 -1.04 0.455 1.05 -- -- -0.302 3.95 24.74 1058 -- --
186.37 0.636 3.68 -1.51 -- 1.3 -- -1.93 -0.435 -- 24.6 1114 -- --
208.98 0.678 3.6 -0.736 0.594 -- 0.469 -- -0.189 2.45 -- -- -- --
209.77 0.678 3.6 -0.748 0.595 -- -- -- -0.192 2.47 -- -- -- --
188.21 0.639 3.63 -1.06 -- 1.12 -- -- -0.321 -- 24.5 1122 -- --
204.51 0.666 3.58 -- 0.474 0.793 -- -- -0.147 3.58 25.4 1052 -- --
230.63 0.71 3.59 -0.723 -- -- -- -- -0.177 -- -- -- -- --
224.53 0.701 3.58 -- 0.581 -- -- -- -0.109 2.45 -- -- -- --
215.8 0.684 3.59 -- -- 0.886 -- -- -0.169 -- 24.8 1116 -- --
244.42 0.73 3.58 -- -- -- -- -- -0.097 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.80 temperature 20 720 > th dose dependent rect. 16 7
2 169.25 temperature 25 720 > th dose dependent rect. 17 15
4 169.28 temperature 25 720 > th dose dependent sin 13 NA
7 169.46 temperature 25 720 > th dose dependent rect. 16 11
14 169.62 temperature 10 720 > th dose dependent rect. 15 8
28 169.96 wind 7 43200 > th dose dependent rect. 16 14
29 170.08 wind 7 43200 > th dose independent rect. 17 13
32 170.24 wind 7 43200 < th dose independent rect. 17 13
70 171.13 wind 7 43200 > th dose independent sin 12 NA
72 171.20 wind 7 43200 < th dose independent sin 12 NA
73 171.20 temperature 30 720 < th dose dependent rect. 17 4
82 171.33 temperature 30 720 < th dose dependent rect. 16 7
93 171.52 radiation 20 1440 < th dose dependent rect. 16 1
127 171.89 wind 7 43200 > th dose independent rect. 19 1
154 172.17 wind 7 43200 > th dose dependent sin 13 NA
162 172.28 radiation 40 1440 < th dose dependent rect. 16 1
196 172.58 radiation 1 1440 > th dose dependent rect. 16 1
199 172.62 wind 7 43200 < th dose independent rect. 19 1
200 172.62 wind 7 43200 > th dose dependent rect. 17 6
209 172.75 wind 7 43200 > th dose independent rect. 17 6
232 172.97 wind 7 43200 < th dose independent rect. 17 6
234 172.98 temperature 30 720 < th dose dependent rect. 19 1
236 172.99 temperature 25 720 > th dose independent rect. 16 8
275 173.40 radiation 10 1440 > th dose independent rect. 15 2
278 173.42 temperature 25 720 > th dose dependent rect. 20 3
405 174.29 temperature 25 720 < th dose independent rect. 15 9
419 174.38 temperature 20 720 > th dose dependent rect. 17 2
426 174.42 wind 5 43200 > th dose dependent rect. 16 22
554 175.06 wind 7 43200 > th dose independent rect. 12 22
563 175.12 wind 7 43200 < th dose independent rect. 12 22
580 175.19 radiation 40 1440 < th dose dependent rect. 16 11
583 175.21 radiation 40 1440 < th dose dependent rect. 16 5
620 175.33 radiation 40 1440 < th dose dependent rect. 16 9
632 175.36 wind 7 43200 > th dose independent rect. 7 22
651 175.38 wind 7 43200 < th dose independent rect. 7 22
731 175.58 wind 7 43200 < th dose independent no NA NA
734 175.59 wind 7 43200 > th dose independent no NA NA
737 175.59 wind 7 43200 < th dose independent rect. 1 23
741 175.60 wind 7 43200 > th dose independent rect. 1 23
748 175.63 wind 7 43200 > th dose independent rect. 12 17
771 175.67 radiation 20 1440 < th dose independent rect. 16 1
785 175.71 radiation 20 1440 < th dose independent rect. 16 6
788 175.71 wind 5 43200 > th dose dependent rect. 11 22
793 175.74 wind 7 43200 < th dose independent rect. 3 23
794 175.74 temperature 30 720 < th dose dependent sin 17 NA
799 175.75 wind 7 43200 > th dose independent rect. 3 23
802 175.76 wind 7 43200 < th dose independent rect. 12 17
804 175.76 wind 7 43200 > th dose independent rect. 21 23
833 175.84 wind 7 43200 < th dose independent rect. 21 23
859 175.87 wind 5 43200 > th dose dependent rect. 7 22
865 175.89 radiation 20 1440 < th dose independent rect. 16 11
882 175.92 wind 5 43200 > th dose dependent no NA NA
914 175.96 wind 5 43200 > th dose dependent rect. 21 23
925 175.99 wind 5 43200 > th dose dependent rect. 24 23
944 176.02 humidity 80 1440 < th dose dependent rect. 16 1
946 176.03 wind 7 43200 > th dose dependent rect. 12 19
963 176.06 radiation 20 1440 < th dose independent rect. 16 13