Os07g0618000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0618000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 351.64 | 0.881 | 9.87 | -2.51 | 0.325 | 2.54 | -1.63 | -1.58 | -1.35 | 0.492 | 15.54 | 690 | 21.3 | 7.27 |
| 353.16 | 0.875 | 9.86 | -2.29 | 0.423 | 2.48 | -1.87 | -- | -1.31 | 1.8 | 16.08 | 670 | 21.3 | 7.98 |
| 362.83 | 0.887 | 9.87 | -2.46 | 0.342 | 2.49 | -- | -1.57 | -1.35 | 1.12 | 16.09 | 687 | 21.3 | 7.25 |
| 365.44 | 0.89 | 9.85 | -2.23 | 0.533 | 2.43 | -- | -- | -1.31 | 1.65 | 16.1 | 682 | 21.6 | 7.65 |
| 365.99 | 0.891 | 9.87 | -2.5 | -- | 2.62 | -- | -2.12 | -1.36 | -- | 15.52 | 651 | 20.9 | 7.78 |
| 419.79 | 0.961 | 9.72 | -1.83 | 2.01 | -- | -0.928 | -- | -0.94 | 5.45 | -- | -- | -- | -- |
| 421.75 | 0.962 | 9.72 | -1.83 | 2.01 | -- | -- | -- | -0.936 | 5.55 | -- | -- | -- | -- |
| 372.31 | 0.899 | 9.85 | -2.24 | -- | 2.61 | -- | -- | -1.33 | -- | 15.74 | 651 | 20.9 | 7.93 |
| 471.97 | 1.01 | 9.77 | -- | 1.28 | 2.45 | -- | -- | -0.948 | 0.77 | 10.71 | 546 | 0.695 | 6.33 |
| 631.78 | 1.17 | 9.75 | -1.76 | -- | -- | -- | -- | -0.887 | -- | -- | -- | -- | -- |
| 509.88 | 1.06 | 9.67 | -- | 1.98 | -- | -- | -- | -0.732 | 5.59 | -- | -- | -- | -- |
| 490.63 | 1.03 | 9.77 | -- | -- | 2.28 | -- | -- | -0.904 | -- | 12.37 | 416 | 21.2 | 10.9 |
| 713.75 | 1.25 | 9.7 | -- | -- | -- | -- | -- | -0.691 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 352.80 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 17 | 359.21 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 18 | 359.35 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 23 | 359.80 | temperature | 15.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 25 | 359.90 | temperature | 10.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 30 | 360.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 37 | 361.12 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 60 | 361.66 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 91 | 362.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 9 |
| 105 | 363.17 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 156 | 363.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 157 | 363.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 161 | 363.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 165 | 364.00 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 226 | 364.85 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 235 | 365.00 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 16 |
| 248 | 365.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 257 | 365.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 293 | 365.93 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 307 | 366.12 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 433 | 367.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 438 | 367.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 440 | 367.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 447 | 368.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 451 | 368.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 452 | 368.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 456 | 368.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 495 | 368.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 507 | 368.60 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 540 | 368.90 | temperature | 30.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 611 | 369.37 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 621 | 369.45 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 637 | 369.52 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 767 | 370.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 800 | 370.73 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 829 | 370.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 4 |
| 865 | 371.06 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 867 | 371.08 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 900 | 371.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 7 |
| 928 | 371.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 7 |