Os07g0617100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os07g0617100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 458.15 | 1.01 | 4.99 | -4.51 | 2.25 | 2.8 | -4.42 | -4.91 | -0.909 | 15.1 | 22.54 | 370 | -- | -- |
| 468.44 | 1.01 | 4.88 | -3.65 | 2.3 | 2.37 | -5.19 | -- | -0.667 | 15.2 | 23.26 | 379 | -- | -- |
| 518.37 | 1.06 | 5.04 | -4.89 | 2.1 | 3.13 | -- | -7.02 | -1.01 | 14.9 | 22.28 | 351 | -- | -- |
| 551.37 | 1.09 | 4.92 | -3.9 | 2.55 | 2.73 | -- | -- | -0.733 | 15.6 | 14.91 | 396 | -- | -- |
| 693.31 | 1.23 | 5.11 | -5.27 | -- | 4.63 | -- | -10.5 | -1.32 | -- | 23.49 | 259 | -- | -- |
| 570.53 | 1.12 | 4.82 | -3.14 | 3.24 | -- | -4.51 | -- | -0.271 | 15.9 | -- | -- | -- | -- |
| 628.43 | 1.17 | 4.84 | -3.2 | 3.24 | -- | -- | -- | -0.296 | 16.1 | -- | -- | -- | -- |
| 766.02 | 1.29 | 4.91 | -3.95 | -- | 3.9 | -- | -- | -0.752 | -- | 24.3 | 268 | -- | -- |
| 866.23 | 1.37 | 4.72 | -- | 2.87 | 1.49 | -- | -- | 0.137 | 15.7 | 28.7 | 484 | -- | -- |
| 1198.29 | 1.62 | 4.82 | -3.33 | -- | -- | -- | -- | -0.382 | -- | -- | -- | -- | -- |
| 898.14 | 1.4 | 4.76 | -- | 3.3 | -- | -- | -- | 0.0604 | 16 | -- | -- | -- | -- |
| 1167.23 | 1.59 | 4.79 | -- | -- | 3.35 | -- | -- | -0.214 | -- | 24.74 | 268 | -- | -- |
| 1490.88 | 1.8 | 4.74 | -- | -- | -- | -- | -- | -0.0126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 448.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 7 | 453.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 11 | 454.83 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 19 |
| 13 | 455.36 | temperature | 15 | 270 | > th | dose dependent | sin | 21 | NA |
| 14 | 456.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 23 | 457.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 32 | 459.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 16 |
| 38 | 460.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 63 | 462.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 103 | 464.96 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 19 |
| 116 | 465.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 139 | 466.74 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 13 |
| 142 | 466.79 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 146 | 466.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 195 | 467.95 | temperature | 30 | 270 | < th | dose independent | sin | 19 | NA |
| 221 | 468.64 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 231 | 468.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 250 | 469.30 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 23 |
| 260 | 469.59 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 17 |
| 284 | 470.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 298 | 470.60 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 21 |
| 338 | 471.24 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 351 | 471.39 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 363 | 471.48 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 18 |
| 453 | 473.11 | temperature | 30 | 270 | > th | dose independent | sin | 19 | NA |
| 508 | 473.76 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 22 |
| 526 | 474.01 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 22 |
| 536 | 474.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 586 | 474.74 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 8 |
| 627 | 475.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 658 | 475.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 740 | 476.33 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 10 |
| 763 | 476.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 774 | 476.67 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 831 | 477.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 938 | 477.97 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 944 | 478.09 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |