FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0616800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sucrose synthase 3 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0544) R2 : 0.0734
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.61 (0.793) R2dE : 0.0689 R2E : 0.0694
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.141 (0.115) R2dN8 : 0.00399 R2N8 : 0.00445
σ : 1.02
deviance : 481
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.1
memory length : 85
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 0.00445

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.86 1.02 3.26 0.142 0.344 6.33 -0.291 5.48 -0.129 0.109 24.65 6 14 1.92
472.83 1.01 3.27 0.245 0.357 5.09 -0.352 -- -0.107 0.504 24.7 83 13.9 0.0178
468.35 1.01 3.26 0.153 0.335 6.21 -- 5.5 -0.129 23.6 24.56 4 13.7 2.02
472.78 1.01 3.25 0.207 0.36 4.89 -- -- -0.109 23.6 25.09 82 14 0.0162
475.9 1.02 3.26 0.142 -- 6.09 -- 5.27 -0.137 -- 24.62 4 13.8 2.02
511.21 1.06 3.27 0.124 0.279 -- -0.168 -- -0.16 23.1 -- -- -- --
511.28 1.06 3.27 0.132 0.282 -- -- -- -0.158 22.7 -- -- -- --
480.06 1.02 3.25 0.188 -- 4.65 -- -- -0.113 -- 25.1 84 14 0.0166
473.6 1.01 3.26 -- 0.35 4.82 -- -- -0.139 23.6 25.1 96 14 0.0167
516.2 1.06 3.26 0.138 -- -- -- -- -0.157 -- -- -- -- --
511.74 1.06 3.27 -- 0.283 -- -- -- -0.173 22.7 -- -- -- --
481 1.02 3.25 -- -- 4.61 -- -- -0.141 -- 25.1 85 14 0.00445
516.7 1.06 3.26 -- -- -- -- -- -0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 467.99 temperature 25.0 10 < th dose dependent rect. 14 1
14 474.28 temperature 25.0 10 < th dose independent rect. 13 1
25 475.62 precipitation 0.1 270 > th dose independent rect. 20 6
26 475.62 precipitation 0.1 270 > th dose dependent rect. 20 6
34 476.90 precipitation 0.1 270 > th dose independent rect. 24 2
35 476.90 precipitation 0.1 270 > th dose dependent rect. 24 2
36 477.11 temperature 15.0 4320 > th dose independent rect. 7 6
37 477.43 temperature 20.0 270 < th dose dependent rect. 24 4
38 477.66 temperature 20.0 90 < th dose dependent rect. 2 1
46 479.19 temperature 15.0 4320 > th dose independent rect. 10 3
49 479.82 temperature 20.0 10 < th dose dependent rect. 2 2
59 480.56 temperature 20.0 10 < th dose dependent rect. 4 1
64 480.96 precipitation 0.1 1440 > th dose independent rect. 10 1
66 480.96 precipitation 0.1 1440 > th dose dependent rect. 10 1
68 481.07 temperature 15.0 4320 < th dose independent rect. 10 1
71 481.07 temperature 15.0 4320 < th dose dependent rect. 10 1
83 481.40 temperature 15.0 4320 > th dose independent rect. 4 9
84 481.52 wind 1.0 30 < th dose dependent rect. 24 2
88 481.63 temperature 20.0 90 < th dose independent rect. 2 1
89 481.64 precipitation 0.1 10 > th dose independent rect. 23 3
91 481.64 precipitation 0.1 10 > th dose dependent rect. 23 3
105 482.41 temperature 20.0 1440 < th dose dependent rect. 13 1
111 482.70 temperature 20.0 1440 < th dose independent rect. 13 1
122 482.93 atmosphere 1005.0 10 > th dose dependent rect. 13 1
125 483.03 temperature 15.0 4320 < th dose independent rect. 4 10
141 483.52 temperature 20.0 270 < th dose independent rect. 24 4
143 483.56 temperature 15.0 4320 < th dose independent rect. 4 8
163 484.15 wind 1.0 30 < th dose independent rect. 24 2
274 485.08 wind 7.0 1440 > th dose dependent rect. 1 2
278 485.10 wind 7.0 1440 > th dose independent rect. 1 2
321 485.46 temperature 20.0 270 < th dose independent rect. 24 8
348 485.85 temperature 15.0 4320 < th dose independent sin 0 NA
374 486.16 temperature 15.0 4320 < th dose independent rect. 4 1
384 486.29 temperature 15.0 4320 > th dose independent sin 0 NA
393 486.35 temperature 15.0 4320 < th dose independent rect. 4 3
422 486.57 temperature 20.0 4320 > th dose independent rect. 13 1
434 486.72 wind 1.0 10 < th dose dependent rect. 21 5
463 487.06 temperature 25.0 4320 < th dose dependent rect. 15 1
497 487.57 temperature 15.0 4320 > th dose independent rect. 3 20
508 487.79 wind 3.0 4320 > th dose dependent rect. 6 3
538 488.12 temperature 25.0 4320 < th dose dependent rect. 10 6
550 488.28 precipitation 0.1 10 < th dose independent sin 19 NA
551 488.28 precipitation 0.1 10 < th dose dependent sin 19 NA
599 488.83 precipitation 0.1 10 > th dose independent sin 19 NA
607 488.90 precipitation 0.1 10 > th dose dependent sin 19 NA
674 489.38 precipitation 0.1 90 > th dose dependent rect. 16 5
700 489.59 wind 3.0 4320 > th dose independent rect. 7 2
706 489.62 wind 5.0 10 > th dose independent rect. 22 8
709 489.63 wind 1.0 4320 > th dose dependent rect. 4 5
717 489.72 wind 5.0 30 > th dose dependent rect. 22 2
721 489.77 wind 5.0 10 > th dose independent rect. 22 2
748 489.92 wind 5.0 30 > th dose dependent rect. 22 8
757 489.97 atmosphere 1000.0 90 < th dose independent rect. 16 3
789 490.09 temperature 20.0 720 < th dose independent rect. 16 1
813 490.20 atmosphere 1000.0 90 < th dose dependent rect. 16 1
823 490.24 temperature 15.0 4320 < th dose independent rect. 6 1
829 490.25 wind 1.0 4320 > th dose dependent rect. 1 10
831 490.26 wind 9.0 4320 < th dose dependent rect. 4 5
836 490.30 temperature 15.0 1440 < th dose dependent rect. 4 1
843 490.33 temperature 20.0 720 < th dose dependent rect. 16 1
845 490.34 precipitation 0.1 90 > th dose independent rect. 16 3
865 490.42 precipitation 0.1 90 > th dose independent rect. 16 1
868 490.42 precipitation 0.1 90 > th dose dependent rect. 16 1
872 490.43 radiation 1.0 4320 > th dose independent rect. 13 1
887 490.49 temperature 15.0 4320 < th dose dependent sin 22 NA
894 490.51 wind 1.0 270 < th dose dependent rect. 22 1
910 490.57 wind 3.0 4320 < th dose independent rect. 7 2
912 490.58 temperature 15.0 4320 > th dose independent rect. 4 1
949 490.71 temperature 20.0 4320 < th dose independent rect. 16 3
966 490.77 precipitation 0.1 10 > th dose independent rect. 17 1
994 490.77 precipitation 0.1 10 > th dose dependent rect. 17 1