Os07g0616100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0616100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 359.76 | 0.891 | 3.17 | -0.372 | 0.00549 | 1.37 | -0.503 | 3.27 | -0.284 | 6.54 | 1012 | 2179 | -- | -- |
| 370.4 | 0.896 | 3.14 | -0.15 | 0.064 | 0.983 | -0.578 | -- | -0.223 | 4.33 | 1011 | 2189 | -- | -- |
| 359.81 | 0.883 | 3.17 | -0.392 | 0.0975 | 1.92 | -- | 4.64 | -0.286 | 2.15 | 1014 | 2026 | -- | -- |
| 370.31 | 0.896 | 3.14 | -0.163 | 0.0932 | 0.809 | -- | -- | -0.226 | 0.701 | 1011 | 2797 | -- | -- |
| 360.22 | 0.884 | 3.17 | -0.376 | -- | 1.66 | -- | 3.96 | -0.286 | -- | 1013 | 2036 | -- | -- |
| 378.04 | 0.912 | 3.16 | -0.246 | 0.00945 | -- | 0.725 | -- | -0.302 | 18 | -- | -- | -- | -- |
| 378.95 | 0.912 | 3.16 | -0.255 | 0.0787 | -- | -- | -- | -0.3 | 23.4 | -- | -- | -- | -- |
| 370.86 | 0.897 | 3.14 | -0.162 | -- | 0.799 | -- | -- | -0.227 | -- | 1012 | 2806 | -- | -- |
| 370.98 | 0.897 | 3.14 | -- | 0.093 | 0.831 | -- | -- | -0.204 | 0.658 | 1011 | 2791 | -- | -- |
| 379.34 | 0.91 | 3.16 | -0.253 | -- | -- | -- | -- | -0.3 | -- | -- | -- | -- | -- |
| 380.67 | 0.913 | 3.15 | -- | 0.0762 | -- | -- | -- | -0.272 | 23.1 | -- | -- | -- | -- |
| 371.52 | 0.898 | 3.14 | -- | -- | 0.822 | -- | -- | -0.205 | -- | 1011 | 2801 | -- | -- |
| 381.03 | 0.911 | 3.15 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 352.14 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 6 |
| 2 | 353.67 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 6 |
| 3 | 356.22 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 4 | 356.62 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 6 | 357.70 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 8 | 357.86 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 9 | 357.87 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 12 | 359.72 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 40 | 359.72 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 68 | 359.74 | humidity | 90.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 78 | 359.74 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 121 | 361.64 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 122 | 361.66 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 131 | 361.74 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 132 | 361.74 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 134 | 361.76 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 150 | 361.76 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 167 | 361.77 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 183 | 361.88 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 195 | 361.88 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 196 | 361.89 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 201 | 361.91 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 208 | 361.95 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 229 | 362.34 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 287 | 362.75 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 293 | 362.85 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 312 | 362.90 | wind | 7.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 321 | 362.99 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 322 | 363.02 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 329 | 363.02 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 1 | NA |
| 343 | 363.12 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 364 | 363.16 | wind | 7.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 434 | 363.24 | wind | 7.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 451 | 363.26 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 460 | 363.27 | wind | 7.0 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 465 | 363.27 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 9 |
| 477 | 363.29 | atmosphere | 1010.0 | 1440 | > th | dose dependent | sin | 6 | NA |
| 539 | 363.58 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 18 | 18 |
| 550 | 363.62 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 557 | 363.65 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 15 |
| 577 | 363.72 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 578 | 363.73 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 594 | 363.73 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 619 | 363.77 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 642 | 363.84 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 707 | 364.06 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 715 | 364.07 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 722 | 364.09 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 788 | 364.32 | atmosphere | 1010.0 | 1440 | > th | dose dependent | no | NA | NA |
| 792 | 364.34 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 808 | 364.39 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 824 | 364.43 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 941 | 364.75 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 946 | 364.77 | humidity | 90.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 984 | 364.91 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |