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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0615100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0255) R2 : 0.000231
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0174 (0.0537) R2dN8 : 0.000298 R2N8 : 0.000231
σ : 0.48
deviance : 105.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.91 0.415 3.27 -0.239 0.161 0.319 -0.251 -15.1 -0.1 7.86 19.13 36 2.04 1.04
86.65 0.437 3.29 0.0019 0.162 1.52 -0.286 -- -0.103 7.65 9.844 19 2.31 1.11
78.09 0.415 3.27 -0.246 0.161 0.32 -- -15.1 -0.1 7.92 19.33 36 2.02 1.02
86.88 0.437 3.29 -0.00479 0.161 1.53 -- -- -0.103 7.91 9.844 19 2.31 1.11
79.5 0.418 3.27 -0.244 -- 0.338 -- -15.1 -0.0995 -- 19.05 35 2.05 1.06
103.02 0.476 3.26 -0.00239 0.219 -- -0.456 -- 0.0108 6.02 -- -- -- --
103.53 0.476 3.26 -0.00632 0.217 -- -- -- 0.0126 6.12 -- -- -- --
88.29 0.44 3.29 -0.00307 -- 1.55 -- -- -0.102 -- 13.74 20 2.26 1.13
86.88 0.436 3.29 -- 0.161 1.53 -- -- -0.102 7.91 13.41 19 2.3 1.12
105.97 0.481 3.27 -0.000199 -- -- -- -- 0.0174 -- -- -- -- --
103.53 0.476 3.26 -- 0.217 -- -- -- 0.0133 6.12 -- -- -- --
88.29 0.439 3.29 -- -- 1.55 -- -- -0.102 -- 13.74 20 2.26 1.13
105.97 0.48 3.27 -- -- -- -- -- 0.0174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.09 temperature 20.0 30 > th dose dependent rect. 2 1
2 78.20 atmosphere 1005.0 30 > th dose independent rect. 2 1
3 78.21 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 78.22 temperature 20.0 30 > th dose independent rect. 2 1
7 78.32 wind 3.0 30 < th dose dependent rect. 2 1
10 78.35 wind 3.0 30 < th dose independent rect. 2 1
17 78.50 humidity 80.0 30 > th dose independent rect. 2 1
18 78.53 humidity 50.0 30 > th dose dependent rect. 2 1
22 78.54 temperature 10.0 30 > th dose independent rect. 2 1
24 78.54 temperature 30.0 30 < th dose independent rect. 2 1
25 78.54 humidity 50.0 30 > th dose independent rect. 2 1
29 78.54 atmosphere 1010.0 30 < th dose independent rect. 2 1
31 78.54 radiation 1.0 30 < th dose independent rect. 2 1
36 78.54 precipitation 0.1 30 < th dose independent rect. 2 1
37 78.54 temperature 10.0 30 > th dose independent rect. 3 23
38 78.54 radiation 1.0 30 < th dose dependent rect. 2 1
43 78.54 precipitation 0.1 30 < th dose dependent rect. 2 1
49 79.02 radiation 10.0 43200 < th dose dependent rect. 3 1
50 79.07 atmosphere 1015.0 30 < th dose dependent rect. 2 1
52 79.09 radiation 1.0 4320 < th dose dependent rect. 3 1
56 79.13 wind 9.0 1440 < th dose independent rect. 3 1
57 79.13 temperature 10.0 1440 > th dose independent rect. 3 1
60 79.13 temperature 30.0 1440 < th dose independent rect. 3 1
64 79.13 humidity 50.0 1440 > th dose independent rect. 3 1
73 79.13 atmosphere 995.0 1440 > th dose independent rect. 3 1
74 79.13 radiation 1.0 1440 < th dose independent rect. 3 1
94 79.13 temperature 10.0 1440 > th dose independent rect. 4 23
110 79.39 temperature 30.0 30 < th dose dependent rect. 2 1
115 79.68 wind 1.0 30 > th dose independent rect. 2 1
138 80.86 atmosphere 995.0 30 > th dose independent rect. 3 23
170 81.82 precipitation 0.1 30 < th dose independent rect. 3 23
171 81.82 precipitation 0.1 30 < th dose dependent rect. 3 23
179 83.68 wind 9.0 30 < th dose independent rect. 3 23
189 86.21 humidity 50.0 30 > th dose independent rect. 3 23
239 89.98 temperature 25.0 270 > th dose independent rect. 23 4
240 90.04 temperature 30.0 30 < th dose independent rect. 3 23
257 90.97 humidity 90.0 90 < th dose independent rect. 2 1
286 92.25 wind 1.0 30 < th dose dependent rect. 11 1
293 92.51 wind 1.0 270 < th dose dependent rect. 8 1
310 93.13 atmosphere 1015.0 30 < th dose independent rect. 3 23
317 93.34 wind 1.0 10 < th dose independent rect. 11 16
326 93.54 wind 1.0 10 < th dose independent rect. 17 10
334 93.68 wind 1.0 30 < th dose independent rect. 11 1
361 94.35 wind 1.0 10 < th dose independent rect. 6 21
367 94.61 wind 1.0 10 < th dose independent rect. 8 19
371 94.63 wind 1.0 270 < th dose independent rect. 8 1
392 95.07 wind 1.0 30 > th dose independent rect. 3 23
441 95.43 radiation 10.0 30 < th dose dependent rect. 3 23
446 95.56 wind 1.0 10 > th dose independent sin 16 NA
450 95.58 wind 3.0 30 < th dose dependent rect. 11 16
481 95.90 atmosphere 995.0 720 > th dose independent rect. 7 8
489 96.02 atmosphere 995.0 720 > th dose independent rect. 15 16
502 96.14 precipitation 0.1 720 < th dose independent rect. 19 8
503 96.14 precipitation 0.1 720 < th dose dependent rect. 19 8
507 96.18 wind 1.0 270 < th dose dependent rect. 8 4
509 96.19 wind 9.0 720 < th dose independent rect. 19 8
512 96.20 temperature 10.0 720 > th dose independent rect. 7 8
513 96.20 atmosphere 1015.0 720 < th dose independent rect. 7 8
515 96.20 temperature 10.0 720 > th dose independent rect. 15 16
546 96.24 atmosphere 995.0 720 > th dose independent rect. 3 16
559 96.31 humidity 50.0 30 > th dose dependent rect. 3 23
568 96.38 radiation 10.0 30 < th dose independent rect. 3 23
571 96.41 precipitation 0.1 720 < th dose independent rect. 7 8
572 96.41 precipitation 0.1 720 < th dose dependent rect. 7 8
575 96.44 temperature 10.0 720 > th dose independent rect. 19 8
576 96.44 temperature 30.0 720 < th dose independent rect. 19 8
577 96.44 humidity 50.0 720 > th dose independent rect. 19 8
578 96.44 atmosphere 995.0 720 > th dose independent rect. 19 8
579 96.44 radiation 1.0 720 < th dose independent rect. 19 8
584 96.44 temperature 10.0 720 > th dose independent rect. 3 16
586 96.44 radiation 1.0 720 < th dose dependent rect. 19 8
592 96.46 temperature 10.0 30 > th dose dependent rect. 3 23
602 96.55 humidity 90.0 10 > th dose independent rect. 24 3
607 96.57 precipitation 0.1 720 < th dose independent rect. 15 16
609 96.57 precipitation 0.1 720 < th dose dependent rect. 15 16
615 96.63 atmosphere 995.0 720 > th dose independent rect. 23 16
628 96.69 radiation 40.0 90 < th dose independent rect. 11 16
634 96.73 precipitation 0.1 720 < th dose independent rect. 15 8
636 96.73 precipitation 0.1 720 < th dose dependent rect. 15 8
637 96.73 wind 1.0 270 < th dose dependent rect. 8 12
665 96.80 wind 1.0 10 > th dose independent rect. 21 14
691 96.98 temperature 10.0 720 > th dose independent rect. 15 8
692 96.98 temperature 10.0 720 > th dose independent rect. 23 16
699 97.01 wind 1.0 30 < th dose independent rect. 2 10
703 97.03 humidity 50.0 720 > th dose independent rect. 3 8
717 97.11 temperature 10.0 720 > th dose independent rect. 3 8
718 97.11 atmosphere 995.0 720 > th dose independent rect. 3 8
719 97.11 temperature 10.0 720 > th dose independent rect. 11 16
735 97.23 wind 1.0 720 > th dose independent rect. 7 8
738 97.27 wind 1.0 10 > th dose independent rect. 21 23
748 97.30 wind 3.0 10 < th dose dependent rect. 20 7
753 97.34 atmosphere 995.0 720 > th dose independent rect. 15 8
757 97.39 atmosphere 995.0 720 > th dose independent rect. 11 16
759 97.40 precipitation 0.1 720 < th dose independent rect. 11 16
762 97.40 precipitation 0.1 720 < th dose dependent rect. 11 16
765 97.42 wind 1.0 4320 < th dose dependent rect. 19 3
770 97.45 humidity 60.0 10 > th dose independent rect. 14 12
773 97.50 wind 9.0 720 < th dose independent rect. 3 8
785 97.53 wind 3.0 30 < th dose dependent rect. 2 11
790 97.57 temperature 25.0 1440 < th dose independent rect. 1 1
795 97.60 wind 3.0 10 < th dose dependent rect. 16 11
805 97.65 humidity 90.0 720 < th dose independent rect. 1 3
816 97.68 wind 1.0 10 > th dose independent no NA NA
817 97.68 radiation 20.0 90 < th dose independent rect. 10 17
842 97.76 atmosphere 995.0 30 > th dose dependent rect. 3 23
843 97.77 wind 9.0 720 < th dose independent rect. 15 16
893 97.82 wind 1.0 30 > th dose dependent rect. 2 1
948 97.99 precipitation 0.1 720 < th dose independent rect. 3 16
950 97.99 precipitation 0.1 720 < th dose dependent rect. 3 16
958 98.02 wind 9.0 30 < th dose dependent rect. 3 23
972 98.06 wind 1.0 720 > th dose independent rect. 15 8
979 98.07 wind 9.0 720 < th dose independent rect. 15 12
998 98.14 wind 1.0 4320 < th dose dependent rect. 17 5
1000 98.15 wind 1.0 4320 < th dose independent rect. 19 3