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Os07g0615000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pentatricopeptide repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.2 (0.0287) R2 : 0.802
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3 (0.0697) R2dE : 0.802 R2E : 0.801
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.11 (0.0605) R2dN8 : 0.0018 R2N8 : 6.43e-06
σ : 0.54
deviance : 134.21
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C
peak time of C : --
E
wheather : radiation
threshold : 19.4
memory length : 269
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.83
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.02 0.497 9.2 -0.116 1.67 -2.17 -1.78 -2.5 0.103 14.4 11.15 270 23 --
120.18 0.511 9.2 -0.0623 1.13 -2.99 -1.39 -- 0.0589 11.6 23.05 259 0.675 --
120.25 0.511 9.21 -0.0958 1.78 -2.21 -- -1.44 0.118 14.5 10.01 284 22.6 --
123.89 0.518 9.2 -0.0566 1.85 -2.09 -- -- 0.116 14.6 10 284 22.5 --
134.68 0.54 9.22 -0.123 -- -2.95 -- -0.13 0.09 -- 21.92 239 2.61 --
170.04 0.611 9.23 -0.0954 3.05 -- -0.0829 -- 0.112 16 -- -- -- --
170.06 0.611 9.23 -0.0964 3.05 -- -- -- 0.112 16 -- -- -- --
134.18 0.54 9.21 -0.0979 -- -3 -- -- 0.105 -- 20 250 2.6 --
124.01 0.519 9.2 -- 1.86 -2.09 -- -- 0.12 14.6 10 284 22.5 --
677.37 1.22 9.22 -0.221 -- -- -- -- 0.0306 -- -- -- -- --
170.31 0.61 9.23 -- 3.05 -- -- -- 0.123 16 -- -- -- --
134.21 0.54 9.2 -- -- -3 -- -- 0.11 -- 19.4 269 2.83 --
678.66 1.22 9.22 -- -- -- -- -- 0.0551 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.58 wind 1.0 270 > th dose independent rect. 3 3
3 102.30 wind 1.0 270 > th dose independent rect. 2 5
6 105.08 wind 7.0 270 < th dose independent rect. 6 21
7 105.35 radiation 10.0 270 < th dose dependent rect. 3 3
8 105.49 radiation 10.0 270 < th dose dependent rect. 2 11
10 105.82 temperature 30.0 270 < th dose dependent rect. 3 2
13 106.15 precipitation 0.1 270 < th dose independent rect. 3 3
14 106.15 precipitation 0.1 270 < th dose dependent rect. 3 3
15 106.17 wind 5.0 270 < th dose independent rect. 3 3
18 106.33 radiation 10.0 270 < th dose independent rect. 2 5
20 106.52 radiation 30.0 90 < th dose independent rect. 3 6
23 106.64 radiation 10.0 270 < th dose independent rect. 3 3
25 106.71 atmosphere 1010.0 270 < th dose independent rect. 3 3
30 107.01 humidity 70.0 90 > th dose independent rect. 3 6
35 107.14 wind 7.0 270 < th dose independent rect. 7 19
40 107.46 temperature 10.0 270 > th dose independent rect. 3 3
42 107.46 temperature 30.0 270 < th dose independent rect. 3 3
43 107.46 humidity 50.0 270 > th dose independent rect. 3 3
46 107.46 atmosphere 995.0 270 > th dose independent rect. 3 3
51 107.46 temperature 10.0 270 > th dose independent rect. 6 21
93 108.62 precipitation 0.1 90 < th dose independent rect. 3 5
95 108.62 precipitation 0.1 90 < th dose dependent rect. 3 5
98 108.81 wind 5.0 90 < th dose independent rect. 3 5
103 108.92 radiation 1.0 270 < th dose independent rect. 3 12
113 109.30 temperature 15.0 90 > th dose independent rect. 8 19
127 109.53 temperature 10.0 90 > th dose independent rect. 3 5
129 109.53 temperature 30.0 90 < th dose independent rect. 3 5
130 109.53 humidity 50.0 90 > th dose independent rect. 3 5
132 109.53 atmosphere 995.0 90 > th dose independent rect. 3 5
133 109.53 atmosphere 1015.0 90 < th dose independent rect. 3 5
136 109.60 temperature 30.0 90 < th dose dependent rect. 3 6
141 109.76 temperature 10.0 90 > th dose dependent rect. 8 19
159 110.19 temperature 10.0 10 > th dose dependent rect. 9 18
217 111.25 precipitation 0.1 270 < th dose independent rect. 6 21
218 111.25 precipitation 0.1 270 < th dose dependent rect. 6 21
227 111.40 atmosphere 995.0 270 > th dose dependent rect. 3 3
243 112.17 precipitation 0.1 90 < th dose independent rect. 8 19
244 112.17 precipitation 0.1 90 < th dose dependent rect. 8 19
246 112.26 radiation 10.0 270 < th dose dependent sin 5 NA
254 112.41 atmosphere 995.0 90 > th dose dependent rect. 3 5
349 114.20 temperature 10.0 1440 > th dose independent rect. 4 6
352 114.20 atmosphere 995.0 1440 > th dose independent rect. 4 6
353 114.20 atmosphere 1015.0 1440 < th dose independent rect. 4 6
354 114.20 temperature 10.0 1440 > th dose independent rect. 10 18
364 114.41 atmosphere 995.0 90 > th dose independent rect. 8 19
373 114.61 wind 9.0 270 < th dose dependent rect. 3 3
380 114.70 precipitation 0.1 10 < th dose independent rect. 9 18
381 114.70 precipitation 0.1 10 < th dose dependent rect. 9 18
400 115.37 atmosphere 995.0 10 > th dose dependent rect. 3 6
412 115.80 wind 7.0 270 < th dose independent rect. 17 9
450 116.68 humidity 50.0 270 > th dose dependent rect. 3 3
501 117.28 precipitation 0.1 270 < th dose independent rect. 2 15
503 117.28 precipitation 0.1 270 < th dose dependent rect. 2 15
535 117.42 radiation 1.0 270 > th dose independent sin 2 NA
537 117.45 humidity 70.0 90 > th dose independent rect. 3 8
539 117.49 radiation 10.0 270 < th dose independent sin 7 NA
553 117.53 temperature 10.0 270 > th dose independent rect. 17 9
554 117.53 radiation 20.0 270 < th dose independent rect. 17 9
557 117.53 temperature 10.0 270 > th dose independent rect. 2 15
558 117.53 atmosphere 1015.0 270 < th dose independent rect. 2 15
574 117.74 temperature 10.0 270 > th dose dependent rect. 3 3
585 117.93 atmosphere 1015.0 90 < th dose independent rect. 8 19
589 117.99 wind 9.0 90 < th dose dependent rect. 3 5
598 118.12 precipitation 0.1 270 < th dose independent rect. 17 9
599 118.12 radiation 40.0 270 < th dose dependent rect. 17 9
600 118.12 precipitation 0.1 270 < th dose dependent rect. 17 9
610 118.21 temperature 30.0 10 < th dose dependent rect. 4 5
675 118.77 temperature 10.0 270 > th dose dependent rect. 18 8
708 118.98 humidity 50.0 270 > th dose independent rect. 17 9
726 119.10 wind 9.0 90 < th dose dependent rect. 8 19
730 119.12 wind 9.0 1440 < th dose independent rect. 4 5
734 119.12 humidity 50.0 1440 > th dose independent rect. 4 5
742 119.19 wind 9.0 270 < th dose independent rect. 2 15
747 119.24 radiation 1.0 270 < th dose independent sin 3 NA
758 119.38 humidity 50.0 90 > th dose dependent rect. 3 6
815 119.91 atmosphere 995.0 270 > th dose independent rect. 17 9
829 120.00 atmosphere 995.0 270 > th dose independent rect. 2 15
849 120.13 wind 1.0 270 > th dose independent rect. 13 17
904 120.53 wind 1.0 270 > th dose independent rect. 2 15
929 120.66 wind 1.0 270 > th dose dependent rect. 2 4
941 120.82 temperature 15.0 270 > th dose independent rect. 6 9
985 121.12 temperature 10.0 90 > th dose dependent rect. 3 5
991 121.19 wind 1.0 270 > th dose independent rect. 11 20