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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0614400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0302) R2 : 0.291
β1 : 0.746 (0.113) R2dD : 0.076 R2D : 0.0221
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.6 (0.137) R2dE : 0.255 R2E : 0.209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0622 (0.0679) R2dN8 : 0.00201 R2N8 : 0.0178
σ : 0.555
deviance : 142.19
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.94
memory length : 427
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.09 0.558 3.61 0.873 0.175 1.77 -0.113 -0.558 -0.0188 17 31.46 369 -- --
141.3 0.554 3.62 0.778 0.177 1.76 0.0314 -- -0.0396 16.9 31.2 375 -- --
141.11 0.553 3.61 0.859 0.174 1.77 -- -0.475 -0.0232 16.9 31.47 371 -- --
141.25 0.554 3.62 0.769 0.168 1.76 -- -- -0.0423 17.8 31.3 403 -- --
142.07 0.555 3.62 0.813 -- 1.62 -- -0.385 -0.0496 -- 31.2 423 -- --
178.63 0.627 3.68 0.358 0.335 -- 0.319 -- -0.353 5.92 -- -- -- --
178.87 0.626 3.68 0.36 0.337 -- -- -- -0.354 5.81 -- -- -- --
142.19 0.555 3.62 0.746 -- 1.6 -- -- -0.0622 -- 30.94 427 -- --
155.88 0.581 3.66 -- 0.0625 1.46 -- -- -0.216 18.8 35.77 407 -- --
184.76 0.635 3.69 0.371 -- -- -- -- -0.346 -- -- -- -- --
182.29 0.632 3.69 -- 0.343 -- -- -- -0.394 5.76 -- -- -- --
155.57 0.581 3.65 -- -- 1.37 -- -- -0.194 -- 31.57 402 -- --
188.38 0.641 3.7 -- -- -- -- -- -0.388 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.37 wind 9.0 43200 > th dose dependent rect. 20 1
2 134.09 wind 9.0 43200 > th dose dependent rect. 17 13
6 135.25 wind 9.0 43200 > th dose dependent rect. 17 7
7 135.26 wind 9.0 43200 > th dose dependent rect. 17 10
10 135.62 wind 9.0 43200 > th dose independent rect. 17 14
13 135.78 wind 9.0 43200 > th dose dependent rect. 17 4
15 136.10 wind 7.0 43200 < th dose independent rect. 20 1
17 136.45 wind 7.0 43200 > th dose independent rect. 20 1
24 136.83 wind 9.0 43200 > th dose independent rect. 17 10
28 137.07 wind 9.0 43200 < th dose independent rect. 17 15
31 137.14 wind 9.0 43200 > th dose independent rect. 17 7
38 137.79 wind 9.0 43200 > th dose dependent sin 13 NA
49 138.33 wind 9.0 43200 > th dose independent sin 12 NA
54 138.49 wind 9.0 43200 < th dose independent rect. 18 6
59 138.65 temperature 15.0 720 > th dose dependent rect. 15 18
67 138.82 temperature 30.0 720 < th dose dependent rect. 16 16
68 138.82 temperature 10.0 720 > th dose dependent rect. 17 17
78 139.04 wind 9.0 43200 > th dose dependent rect. 19 3
81 139.07 wind 9.0 43200 > th dose independent rect. 17 4
89 139.16 temperature 10.0 720 > th dose dependent sin 12 NA
93 139.23 temperature 10.0 4320 > th dose dependent rect. 17 1
105 139.37 wind 9.0 43200 < th dose independent sin 12 NA
112 139.44 wind 9.0 43200 < th dose independent rect. 17 4
114 139.53 wind 9.0 14400 > th dose dependent rect. 20 15
121 139.63 wind 9.0 43200 > th dose dependent rect. 20 10
126 139.76 temperature 30.0 4320 < th dose dependent rect. 17 1
128 139.77 temperature 30.0 720 < th dose dependent sin 12 NA
143 140.00 wind 9.0 43200 > th dose dependent rect. 14 18
166 140.33 humidity 60.0 14400 < th dose dependent rect. 17 16
174 140.42 wind 9.0 43200 > th dose dependent rect. 20 7
199 140.70 atmosphere 995.0 43200 < th dose dependent rect. 15 1
218 140.83 atmosphere 1000.0 43200 < th dose dependent rect. 11 5
230 140.94 wind 9.0 43200 > th dose independent rect. 20 5
245 141.04 radiation 1.0 43200 < th dose dependent rect. 20 4
248 141.06 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
267 141.15 temperature 30.0 1440 < th dose dependent rect. 8 1
273 141.18 humidity 90.0 14400 < th dose independent rect. 21 1
279 141.20 temperature 30.0 270 < th dose dependent rect. 14 23
297 141.29 temperature 15.0 1440 > th dose dependent rect. 8 1
299 141.30 wind 9.0 43200 > th dose independent rect. 20 7
318 141.40 wind 9.0 43200 > th dose independent rect. 20 10
325 141.44 temperature 30.0 4320 < th dose independent rect. 14 1
328 141.45 atmosphere 995.0 43200 < th dose independent rect. 15 1
330 141.45 temperature 30.0 270 < th dose dependent rect. 17 23
335 141.47 precipitation 0.1 14400 > th dose dependent rect. 20 6
360 141.59 humidity 60.0 14400 < th dose independent rect. 17 3
381 141.65 wind 9.0 14400 > th dose independent rect. 20 14
385 141.67 atmosphere 995.0 43200 > th dose independent rect. 15 1
391 141.70 wind 9.0 43200 < th dose independent rect. 20 5
393 141.70 wind 9.0 43200 > th dose independent rect. 14 19
395 141.70 radiation 1.0 43200 < th dose dependent rect. 20 8
400 141.73 wind 5.0 43200 > th dose independent rect. 14 19
428 141.80 wind 5.0 43200 < th dose independent rect. 16 16
429 141.80 wind 5.0 43200 < th dose independent rect. 14 20
443 141.84 humidity 60.0 14400 < th dose dependent rect. 17 3
462 141.86 wind 5.0 43200 > th dose independent rect. 16 15
466 141.87 wind 9.0 43200 < th dose independent rect. 14 20
478 141.91 wind 5.0 43200 < th dose independent sin 13 NA
488 141.95 temperature 30.0 4320 > th dose independent rect. 14 1
495 141.96 wind 5.0 43200 > th dose independent sin 13 NA
504 141.99 wind 9.0 43200 < th dose independent rect. 20 7
560 142.14 humidity 90.0 14400 > th dose dependent rect. 22 1
564 142.14 temperature 15.0 270 > th dose dependent rect. 11 23
566 142.15 wind 9.0 43200 < th dose independent rect. 20 10
586 142.19 temperature 30.0 270 < th dose dependent no NA NA
629 142.29 temperature 15.0 270 > th dose dependent rect. 23 23
657 142.39 radiation 30.0 4320 < th dose independent rect. 15 17
660 142.40 wind 5.0 43200 > th dose independent rect. 17 10
669 142.43 wind 9.0 14400 < th dose independent rect. 20 14
693 142.48 atmosphere 1000.0 43200 < th dose independent rect. 11 1
699 142.49 atmosphere 1000.0 43200 > th dose independent rect. 11 1
700 142.49 temperature 10.0 270 > th dose dependent no NA NA
717 142.53 humidity 50.0 14400 < th dose dependent rect. 16 19
756 142.61 wind 5.0 43200 < th dose independent rect. 17 10
797 142.69 temperature 25.0 4320 > th dose independent rect. 20 1
800 142.69 humidity 50.0 14400 > th dose independent rect. 17 17
865 142.82 temperature 30.0 270 < th dose dependent rect. 3 23
895 142.89 atmosphere 995.0 43200 > th dose independent rect. 13 9
916 142.91 temperature 10.0 720 > th dose dependent rect. 8 23
948 142.97 temperature 10.0 720 > th dose dependent rect. 6 23
957 142.99 atmosphere 995.0 43200 < th dose dependent rect. 15 7
975 143.02 temperature 25.0 4320 > th dose independent rect. 19 3
995 143.04 atmosphere 995.0 43200 < th dose independent rect. 13 9