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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0614000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Strictosidine synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0286) R2 : 0.588
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.46 (0.0735) R2dC : 0.362 R2C : 0.27
β3 : -3.51 (0.224) R2dE : 0.233 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.638 (0.0608) R2dN8 : 0.138 R2N8 : 0.049
σ : 0.534
deviance : 131.55
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C
peak time of C : 7.7
E
wheather : humidity
threshold : 93.72
memory length : 354
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.4
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.57 0.494 13.6 0.394 1.42 -3.35 1.89 2.87 -0.609 7.98 93.67 342 12.7 --
114.21 0.498 13.6 0.448 1.45 -3.38 1.92 -- -0.597 7.77 93.58 355 12.3 --
120.66 0.512 13.6 0.446 1.43 -3.48 -- 2.96 -0.604 7.78 93.66 354 12.7 --
124.91 0.521 13.6 0.5 1.45 -3.52 -- -- -0.618 7.68 93.67 354 12.4 --
228.78 0.704 13.6 0.47 -- -3.5 -- 2.98 -0.587 -- 93.43 329 13 --
177.86 0.625 13.5 0.349 1.35 -- 2.13 -- -0.446 8.72 -- -- -- --
192.77 0.65 13.5 0.418 1.35 -- -- -- -0.446 8.64 -- -- -- --
233.16 0.711 13.6 0.493 -- -3.3 -- -- -0.579 -- 93.44 328 12.9 --
131.55 0.534 13.6 -- 1.46 -3.51 -- -- -0.638 7.7 93.72 354 12.4 --
295.55 0.803 13.6 0.422 -- -- -- -- -0.435 -- -- -- -- --
197.38 0.657 13.5 -- 1.35 -- -- -- -0.493 8.61 -- -- -- --
240.41 0.722 13.6 -- -- -3.16 -- -- -0.621 -- 93.53 322 12.9 --
300.25 0.809 13.6 -- -- -- -- -- -0.481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.28 humidity 90.0 270 > th dose dependent rect. 17 9
2 136.63 humidity 90.0 270 > th dose dependent rect. 12 14
18 137.97 humidity 90.0 270 > th dose dependent sin 16 NA
23 138.75 humidity 90.0 720 > th dose dependent rect. 20 1
24 139.01 wind 1.0 270 < th dose dependent rect. 24 1
25 139.16 radiation 10.0 1440 < th dose dependent rect. 13 1
30 139.92 radiation 1.0 1440 > th dose independent rect. 9 4
33 140.30 radiation 10.0 1440 < th dose dependent rect. 11 4
34 140.37 radiation 1.0 1440 > th dose independent rect. 12 1
38 140.54 radiation 1.0 1440 > th dose independent rect. 12 3
43 140.95 radiation 1.0 1440 < th dose independent rect. 9 4
44 140.95 radiation 1.0 1440 < th dose dependent rect. 9 4
48 141.03 radiation 1.0 1440 < th dose independent rect. 9 6
52 141.14 radiation 10.0 720 < th dose independent rect. 14 3
54 141.25 radiation 1.0 1440 < th dose independent rect. 13 1
56 141.27 radiation 1.0 1440 < th dose independent rect. 11 4
81 141.74 humidity 80.0 720 > th dose independent rect. 11 8
84 141.81 wind 1.0 270 < th dose independent rect. 23 2
91 141.94 humidity 80.0 720 > th dose independent rect. 15 4
123 143.39 humidity 80.0 720 < th dose independent rect. 11 8
130 143.94 humidity 80.0 1440 > th dose independent rect. 11 3
179 145.15 humidity 80.0 1440 < th dose independent rect. 11 3
195 145.83 atmosphere 1005.0 270 < th dose independent rect. 23 2
197 145.91 humidity 80.0 1440 > th dose dependent rect. 12 2
199 146.00 humidity 80.0 720 > th dose dependent rect. 12 9
240 146.86 atmosphere 1005.0 270 < th dose dependent rect. 1 1
305 147.85 humidity 90.0 270 > th dose independent rect. 17 10
311 148.00 precipitation 0.1 270 > th dose independent rect. 19 9
317 148.11 humidity 80.0 1440 < th dose independent rect. 8 7
340 148.40 humidity 90.0 270 > th dose independent rect. 12 15
356 148.55 atmosphere 1005.0 270 < th dose independent rect. 22 4
383 148.75 humidity 90.0 270 > th dose independent sin 15 NA
392 148.85 humidity 90.0 720 < th dose dependent rect. 11 17
406 148.94 humidity 90.0 720 < th dose dependent rect. 13 15
433 149.10 humidity 80.0 1440 > th dose independent rect. 8 8
454 149.18 humidity 70.0 720 > th dose dependent rect. 16 1
460 149.20 humidity 90.0 720 > th dose independent rect. 20 1
498 149.42 precipitation 0.1 270 > th dose independent rect. 17 11
510 149.46 humidity 80.0 1440 > th dose independent rect. 9 6
519 149.51 humidity 80.0 720 < th dose independent sin 20 NA
534 149.64 humidity 80.0 720 > th dose independent sin 21 NA
579 149.84 radiation 1.0 1440 > th dose independent rect. 9 1
584 149.85 radiation 10.0 1440 < th dose dependent rect. 11 16
590 149.88 atmosphere 1005.0 10 < th dose dependent rect. 1 5
751 150.49 precipitation 0.1 270 > th dose independent rect. 13 15
766 150.53 radiation 20.0 1440 < th dose independent rect. 11 2
800 150.67 wind 1.0 270 < th dose independent rect. 16 9
805 150.68 humidity 90.0 720 < th dose dependent sin 17 NA
810 150.69 atmosphere 1005.0 720 < th dose independent rect. 20 1
926 151.23 precipitation 0.1 270 > th dose independent sin 13 NA